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CD109 CD109 molecule [ Sus scrofa (pig) ]

Gene ID: 100155478, updated on 17-Aug-2024

Summary

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Official Symbol
CD109provided by VGNC
Official Full Name
CD109 moleculeprovided by VGNC
Primary source
VGNC:VGNC:86388
See related
Ensembl:ENSSSCG00000004485
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 3.8), lung (RPKM 2.8) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CD109 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
34
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (92081675..92241079, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (103135603..103292354, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 7A2 Neighboring gene collagen type XII alpha 1 chain Neighboring gene uncharacterized LOC106506626 Neighboring gene solute carrier family 17 member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD109 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    92081675..92241079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001927545.6 → XP_001927580.3  CD109 antigen isoform X1

    UniProtKB/TrEMBL
    A0A4X1TYA4, A0A8D0XU23, A0A8D1AXL6, K7GKY0
    Related
    ENSSSCP00000028508.1, ENSSSCT00000035901.3
    Conserved Domains (6) summary
    cd02897
    Location:907 → 1194
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:693 → 784
    A2M; Alpha-2-macroglobulin family
    pfam01835
    Location:131 → 221
    A2M_N; MG2 domain
    pfam07677
    Location:1311 → 1395
    A2M_recep; A-macroglobulin receptor
    pfam07678
    Location:959 → 1196
    A2M_comp; A-macroglobulin complement component
    pfam07703
    Location:470 → 596
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region

  2. XM_021092387.1 → XP_020948046.1  CD109 antigen isoform X2

    UniProtKB/TrEMBL
    F1RQH9
    Related
    ENSSSCP00000077383.1, ENSSSCT00000094194.1
    Conserved Domains (5) summary
    cd02897
    Location:744 → 1031
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:530 → 621
    A2M; Alpha-2-macroglobulin family
    pfam07677
    Location:1148 → 1232
    A2M_recep; A-macroglobulin receptor
    pfam07703
    Location:305 → 436
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region
    cl19929
    Location:2 → 58
    A2M_N; MG2 domain
Nucleotide Protein
Heading Accession and Version

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