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idh3b isocitrate dehydrogenase (NAD(+)) 3 beta [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100144949, updated on 17-Aug-2024

Summary

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Official Symbol
idh3bprovided by Xenbase
Official Full Name
isocitrate dehydrogenase (NAD(+)) 3 betaprovided by Xenbase
Primary source
Xenbase:XB-GENE-5825105
See related
Ensembl:ENSXETG00000014969
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See idh3b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (924967..941578, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683504.1 (424405..436880)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD57 Neighboring gene NOP56 ribonucleoprotein Neighboring gene vomeronasal type-2 receptor 26-like Neighboring gene uncharacterized LOC101735102 Neighboring gene vomeronasal type-2 receptor 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
isocitrate dehydrogenase [NAD] subunit beta, mitochondrial
Names
isocitrate dehydrogenase 3 (NAD+) beta
NP_001119993.1
XP_012809571.1
XP_012809573.1
XP_031750449.1
XP_031750529.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126521.1 → NP_001119993.1  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial

    See identical proteins and their annotated locations for NP_001119993.1

    Status: PROVISIONAL

    Source sequence(s)
    BC158254
    UniProtKB/TrEMBL
    A0A1B8Y3N1, B0BM21
    Related
    ENSXETP00000073379.2, ENSXETT00000068644.2
    Conserved Domains (1) summary
    cl00445
    Location:40 → 373
    Iso_dh; Isocitrate/isopropylmalate dehydrogenase

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    924967..941578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031894669.1 → XP_031750529.1  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A1B8Y3N1, A0A8J1IY49
    Related
    ENSXETP00000084046.1, ENSXETT00000101278.2
    Conserved Domains (1) summary
    cl00445
    Location:42 → 375
    Iso_dh; Isocitrate/isopropylmalate dehydrogenase

  2. XM_012954119.3 → XP_012809573.1  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A6I8RNV5, A0A6I8SGT1
    Related
    ENSXETP00000092413.2, ENSXETT00000079808.2
    Conserved Domains (1) summary
    cl00445
    Location:20 → 353
    Iso_dh; Isocitrate/isopropylmalate dehydrogenase

  3. XM_012954117.3 → XP_012809571.1  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A1B8Y3M9, A0A8J0SC61
    Related
    ENSXETP00000059119.3, ENSXETT00000064914.3
    Conserved Domains (1) summary
    cl00445
    Location:40 → 373
    Iso_dh; Isocitrate/isopropylmalate dehydrogenase

  4. XM_031894589.1 → XP_031750449.1  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A1B8Y3M9, A0A8J1IXW8
    Conserved Domains (1) summary
    cl00445
    Location:42 → 375
    Iso_dh; Isocitrate/isopropylmalate dehydrogenase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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