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ino80b.S INO80 complex subunit B S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100101296, updated on 4-Nov-2024

Summary

Official Symbol
ino80b.S
Official Full Name
INO80 complex subunit B S homeolog
Primary source
Xenbase:XB-GENE-6251946
Locus tag
XELAEV_18008665mg
See related
EnsemblRapid:ENSXLAG00005000466 AllianceGenome:Xenbase:XB-GENE-6251946
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
hies2; ino80b; papa-1; znhit4; hmga1l4; hmgiyl4; pap-1bp
Summary
Predicted to act upstream of or within chromatin remodeling. Predicted to be part of Ino80 complex. Orthologous to human INO80B (INO80 complex subunit B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See ino80b.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (344098..350484)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (332284..338873)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein MGC69154 Neighboring gene WW domain binding protein 1 S homeolog Neighboring gene uncharacterized LOC121399254 Neighboring gene rhotekin S homeolog Neighboring gene drebrin

Genomic regions, transcripts, and products

General protein information

Preferred Names
uncharacterized protein LOC100101296

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099883.1NP_001093353.1  uncharacterized protein LOC100101296

    See identical proteins and their annotated locations for NP_001093353.1

    Status: PREDICTED

    Source sequence(s)
    BC142565
    UniProtKB/TrEMBL
    A0A974DQV9, A5PKP5
    Related
    ENSXLAP00005001306.1, ENSXLAT00005001346.1
    Conserved Domains (2) summary
    pfam04438
    Location:276304
    zf-HIT; HIT zinc finger
    pfam04795
    Location:186258
    PAPA-1; PAPA-1-like conserved region

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    344098..350484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)