txid85569[Organism] - GEO DataSets

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Items: 13

Select item 2000637151.

Transcriptional profiles of Salmonella Typhimurium 4/74 parent and relA spoT, rpoS and dksA strains during stationary phase, and RNA polymerase distribution as determined by chromatin immunoprecipitation in parent, relA spoT and dksA strains

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis

Type:: Expression profiling by array; Genome binding/occupancy profiling by array

Platforms:: GPL19472 GPL13609
101 Samples

Download data: GPR, TXT

Series

Accession:: GSE63715

ID:: 200063715

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000637142.

Transcriptomic profiles of S. Typhimurium SL1344 parent strain and ΔrpoS and ΔrelAΔspoT and ΔrelAΔspoTΔrpoS mutant strains grown to various optical densities during late-log and stationary phase in LB aerobic batch culture

(Submitter supplied) S. Typhimurium SL1344 parental strain and isogenic ΔrpoS, ΔrelAΔspoT and ΔrelAΔspoTΔrpoS strains were grown to OD600=1.0, OD600=2.3, OD600=3.0 and OD600=4.2 in Luria-Bertani medium.

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis

Type:: Expression profiling by array

Platform:: GPL13609
35 Samples

Download data: GPR

Series

Accession:: GSE63714

ID:: 200063714

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000637133.

Transcriptomic profiles of S. Typhimurium SL1344 parent strain and ΔdksA and ΔrelAΔspoTΔdksA mutant strains grown to various optical densities during late-log and stationary phase in LB aerobic batch culture

(Submitter supplied) S. Typhimurium SL1344 parental strain and isogenic ΔrpoS, ΔdksA and ΔrelAΔspoT, ΔrelAΔspoTΔrpoS and ΔrelAΔspoTΔdksA strains were grown to OD600=1.0, OD600=2.3, OD600=3.0 and OD600=4.2 in Luria-Bertani medium.

Organism:: Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Type:: Expression profiling by array

Platform:: GPL13609
30 Samples

Download data: TXT

Series

Accession:: GSE63713

ID:: 200063713

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000554304.

Effect of cortisol on S. Typhimurium parental strain and an isogenic scsA mutant

(Submitter supplied) S. Typhimurium 112910a parental strain and an isogenic ΔscsA strain were grown to stationary phase in SPI2 inducing minimal medium (MM5.8 - Erikkson et al., 2006 Inf & Imm., 74:1243) with or without supplementation with 1µM cortisol

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91

Type:: Expression profiling by array

Platform:: GPL13609
12 Samples

Download data: GPR

Series

Accession:: GSE55430

ID:: 200055430

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000222945.

Transcriptomic profiling of Salmonella during lag, exponential and stationary phases of growth

(Submitter supplied) Transcriptional profiles during all phases of growth of Salmonella Typhimurium SL1344 were obtained and used to investigate growth phase-dependent alterations in gene expression. Viable count growth curve analysis of the growth system showed a culture lag time of 2.09 hours, and profiles at 4, 20, 40, 60, 90 and 120 minutes were measured accordingly. For comparison, profiles of the inoculum (0 min), mid-exponential (380 min), late-exponential (630 min), early-stationary (900 min) and late-stationary phase (2880 min) were also obtained. more...

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104

Type:: Expression profiling by array

Platform:: GPL10431
46 Samples

Download data: TXT

Series

Accession:: GSE22294

ID:: 200022294

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000342696.

Salmonella Typhimurium: Wild type SL1344 Vs. ∆relA, ∆spoT (ppGpp0) strain grown under SPI1-inducing conditions

(Submitter supplied) Transcriptional profiling of early stationary phase S. Typhimurium, comparing wild type SL1344 with an isogenic ∆relA,∆spoT strain (JH3370).

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91; Salmonella enterica subsp. enterica serovar Enteritidis

Type:: Expression profiling by array

Platform:: GPL13609
7 Samples

Download data: TXT

Series

Accession:: GSE34269

ID:: 200034269

Analyze with GEO2R

Select item 2000329957.

Salmonella Typhimurium: Immobilized growth vs. Planktonic growth

(Submitter supplied) Transcriptional profiling of four growth phases S. Typhimurium comparing immobilised growth with planktonic growth.

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Type:: Expression profiling by array

Platform:: GPL13609
37 Samples

Download data: TXT

Series

Accession:: GSE32995

ID:: 200032995

Select item 2000309258.

Salmonella Typhimurium: control vs. T2 toxin treatment

(Submitter supplied) Transcriptional profiling of log and stationary phases of S. Typhimurium, comparing untreated controls with T2 toxin-treated samples.

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91; Salmonella enterica subsp. enterica serovar Enteritidis

Type:: Expression profiling by array

Platform:: GPL13609
12 Samples

Download data: TXT

Series

Accession:: GSE30925

ID:: 200030925

Analyze with GEO2R

Select item 2000309249.

Salmonella Typhimurium: wild type vs. ∆scsA mutant

(Submitter supplied) Transcriptional profiling of log and stationary phases of S. Typhimurium, comparing wild type with the ∆scsA strain.

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91; Salmonella enterica subsp. enterica serovar Enteritidis

Type:: Expression profiling by array

Platform:: GPL13609
12 Samples

Download data: TXT

Series

Accession:: GSE30924

ID:: 200030924

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003092310.

Salmonella Typhimurium: control vs. cortisol treatment

(Submitter supplied) Transcriptional profiling of log and stationary phases of S. Typhimurium, comparing untreated controls with cortisol-treated samples.

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Type:: Expression profiling by array

Platform:: GPL13609
12 Samples

Download data: TXT

Series

Accession:: GSE30923

ID:: 200030923

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002939911.

Salmonella Typhimurium: control vs. Deoxynivalenol (DON) treatment

(Submitter supplied) Transcriptional profiling of log and stationary phase S. Typhimurium, comparing untreated controls with Deoxynivalenol treated samples.

Organism:: Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91; Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Type:: Expression profiling by array

Platform:: GPL13609
12 Samples

Download data: TXT

Series

Accession:: GSE29399

ID:: 200029399

Analyze with GEO2R

Select item 10001360912.

SALSA 2 IFR Salmonella 8K Arrays

(Submitter supplied) PCR product microarray of ORF's from S. Typhimurium LT2, S. Typhimurium SL1344, S. Typhimurium DT104, S. Enteritidis PT4, and S. Gallinarum 287/91. For the description of PCR amplification and printing procedures see: Clements et al., (2002) PNAS 99(13): 8784-8789; Nagy et al., (2006) Infect. Immun. 74(10):5914-5925

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91

10 Series
163 Samples

Download data

Platform

Accession:: GPL13609

ID:: 100013609

Select item 10001043113.

IFR_Salmonella_5.6k_v1.0

(Submitter supplied) PCR product microarray of ORF's from S. Typhimurium LT2, S. Typhimurium SL1344, S. Typhimurium DT104 and S. Enteritidis PT4. For the description of PCR amplification and printing procedures see: Clements et al., (2002) PNAS 99(13): 8784-8789; Nagy et al., (2006) Infect. Immun. 74(10):5914-5925

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344