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Items: 1 to 20 of 25

1.

Analysis of microRNAs, phased small interfering RNAs and their functions in Rosa rugosa Thunb

(Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNAs that play important roles by regulating other genes. Rose, Rosa rugosa Thunb., is an important ornamental and edible plant, yet there are only a few studies on the miRNAs and their functions in rose. Here we carried out computational and experimental analysis of miRNAs, phased small interfering RNAs (phasiRNAs) and mRNAs in rose by analyzing 10 small RNA sequencing profiles from roots, petals, pollens, stamens, and leaves and 4 RNA-seq profiles in leaves and petals of rose. more...
Organism:
Rosa rugosa
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24893
4 Samples
Download data: FASTA, XLS
Series
Accession:
GSE113148
ID:
200113148

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Identification and comprehensive analysis of microRNAs and phased small interfering RNAs in Rosa rugosa Thunb

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Rosa rugosa
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL24600 GPL24599
11 Samples
Download data: TXT
Series
Accession:
GSE110542
ID:
200110542

PubMed Full text in PMC Similar studies

3.

Identification and comprehensive analysis of microRNAs and phased small interfering RNAs in Rosa rugosa Thunb [degradome]

(Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNAs that regulate target mRNAs by inducing degradation or preventing translation of their target mRNAs. Rose, Rosa rugosa Thunb., is an important ornamental and edible plant, yet there are only a few studies on the miRNAs of rose. Here we carried out computational and experimental analysis of miRNAs and phased small interfering RNAs (phasiRNAs) in rose by analyzing 10 small RNA profiles from roots, petals, pollens, stamens, and leaves. more...
Organism:
Rosa rugosa
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL24600
1 Sample
Download data: TXT
Series
Accession:
GSE110494
ID:
200110494

SRA Run Selector

4.

Identification and comprehensive analysis of microRNAs and phased small interfering RNAs in Rosa rugosa Thunb [ncRNA-seq]

(Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNAs that regulate target mRNAs by inducing degradation or preventing translation of their target mRNAs. Rose, Rosa rugosa Thunb., is an important ornamental and edible plant, yet there are only a few studies on the miRNAs of rose. Here we carried out computational and experimental analysis of miRNAs and phased small interfering RNAs (phasiRNAs) in rose by analyzing 10 small RNA profiles from roots, petals, pollens, stamens, and leaves. more...
Organism:
Rosa rugosa
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL24599
10 Samples
Download data: TXT
Series
Accession:
GSE110490
ID:
200110490

PubMed Full text in PMC Similar studies SRA Run Selector

5.

Deep sequencing and analysis of small RNAs from the flowers of four Rosa

(Submitter supplied) High-throughput sequencing was employed to identify conserved and variable microRNAs among 4 Rosa
Organism:
Rosa hybrid cultivar; Rosa rugosa
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL15889 GPL15890
4 Samples
Download data: TXT
Series
Accession:
GSE39882
ID:
200039882

PubMed Full text in PMC Similar studies SRA Run Selector

6.

Illumina HiSeq 4000 (Rosa rugosa)

Organism:
Rosa rugosa
1 Series
4 Samples
Download data
Platform
Accession:
GPL24893
ID:
100024893

7.

Illumina HiSeq 2500 (Rosa rugosa)

Organism:
Rosa rugosa
2 Series
1 Sample
Download data
Platform
Accession:
GPL24600
ID:
100024600

8.

Illumina HiSeq 2000 (Rosa rugosa)

Organism:
Rosa rugosa
2 Series
10 Samples
Download data
Platform
Accession:
GPL24599
ID:
100024599

9.

Illumina Genome Analyzer II (Rosa rugosa)

Organism:
Rosa rugosa
1 Series
1 Sample
Download data
Platform
Accession:
GPL15890
ID:
100015890

10.

petal_2

Organism:
Rosa rugosa
Source name:
petal
Platform:
GPL24893
Series:
GSE113148
Download data
Sample
Accession:
GSM3098115
ID:
303098115

SRA Run Selector

11.

petal_1

Organism:
Rosa rugosa
Source name:
petal
Platform:
GPL24893
Series:
GSE113148
Download data
Sample
Accession:
GSM3098114
ID:
303098114

SRA Run Selector

12.

leaf_2

Organism:
Rosa rugosa
Source name:
leaf
Platform:
GPL24893
Series:
GSE113148
Download data
Sample
Accession:
GSM3098113
ID:
303098113

SRA Run Selector

13.

leaf_1

Organism:
Rosa rugosa
Source name:
leaf
Platform:
GPL24893
Series:
GSE113148
Download data
Sample
Accession:
GSM3098112
ID:
303098112

SRA Run Selector

14.

Rose-leaf-degradome

Organism:
Rosa rugosa
Source name:
leaf
Platform:
GPL24600
Series:
GSE110494 GSE110542
Download data: TXT
Sample
Accession:
GSM2992384
ID:
302992384

SRA Run Selector

15.

Rose-leaf-sample-2

Organism:
Rosa rugosa
Source name:
leaf
Platform:
GPL24599
Series:
GSE110490 GSE110542
Download data: TXT
Sample
Accession:
GSM2992361
ID:
302992361

SRA Run Selector

16.

Rose-leaf-sample-1

Organism:
Rosa rugosa
Source name:
leaf
Platform:
GPL24599
Series:
GSE110490 GSE110542
Download data: TXT
Sample
Accession:
GSM2992360
ID:
302992360

SRA Run Selector

17.

Rose-stamen-sample2

Organism:
Rosa rugosa
Source name:
stamen
Platform:
GPL24599
Series:
GSE110490 GSE110542
Download data: TXT
Sample
Accession:
GSM2992359
ID:
302992359

SRA Run Selector

18.

Rose-stamen-sample1

Organism:
Rosa rugosa
Source name:
stamen
Platform:
GPL24599
Series:
GSE110490 GSE110542
Download data: TXT
Sample
Accession:
GSM2992358
ID:
302992358

SRA Run Selector

19.

Rose-pollen-sample-2

Organism:
Rosa rugosa
Source name:
pollen
Platform:
GPL24599
Series:
GSE110490 GSE110542
Download data: TXT
Sample
Accession:
GSM2992357
ID:
302992357

SRA Run Selector

20.

Rose-pollen-sample-1

Organism:
Rosa rugosa
Source name:
pollen
Platform:
GPL24599
Series:
GSE110490 GSE110542
Download data: TXT
Sample
Accession:
GSM2992356
ID:
302992356

SRA Run Selector

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