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Items: 1 to 20 of 36

1.

Monitoring of functional gene responses to biostimulation from TCE-contaminated sites using a functional microarray

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Pseudomonas; Nitrosomonas; Dehalococcoides; Geobacter; Methylosinus; Dehalobacter; Sulfurospirillum; Shewanella; Mycobacterium; Thauera; Desulfitobacterium; groundwater metagenome
Type:
Genome variation profiling by array; Expression profiling by array
Platform:
GPL13409
33 Samples
Download data: PAIR
Series
Accession:
GSE28609
ID:
200028609

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

Monitoring of functional gene responses to biostimulation from a TCE-contaminated site

(Submitter supplied) A functional microarray targeting 24 genes involved in chlorinated solvent biodegradation pathways has been developed and used to monitor the gene expression in a contaminated site (site B) under ERD (enhanced reductive dechlorination) treatment. The microarray format provided by NimbleGen and used in this study is 12x135K. 4 µg of labelled antisense mRNA from 3 groundwater samples were hybridized on the microarray.
Organism:
Methylosinus; Dehalobacter; Sulfurospirillum; Geobacter; Pseudomonas; Nitrosomonas; Dehalococcoides; Shewanella; Mycobacterium; Thauera; Desulfitobacterium; groundwater metagenome
Type:
Expression profiling by array
Platform:
GPL13409
3 Samples
Download data: PAIR
Series
Accession:
GSE28608
ID:
200028608

PubMed Full text in PMC Similar studies Analyze with GEO2R

3.

Monitoring of functional gene responses to ERD (enhanced reductive dechlorination) from four TCE-contaminated sites

(Submitter supplied) A functional microarray targeting 24 genes involved in chlorinated solvent biodegradation pathways has been developed and used to monitor the gene diversity present in four trichloroethylene (TCE) contaminated sites under ERD (enhanced reductive dechlorination) treatment. The microarray format provided by NimbleGen and used in this study is 12x135K. 2 µg of labelled gDNA from 30 groundwater samples were hybridized on the microarrays.
Organism:
Desulfitobacterium; Methylosinus; Dehalococcoides; Shewanella; Pseudomonas; Mycobacterium; Geobacter; groundwater metagenome; Nitrosomonas; Thauera; Dehalobacter; Sulfurospirillum
Type:
Genome variation profiling by array
Platform:
GPL13409
30 Samples
Download data: PAIR
Series
Accession:
GSE28606
ID:
200028606

PubMed Full text in PMC Similar studies Analyze with GEO2R

4.

antisense mRNA from contaminated site B, campaign 5, well P3 (SBC5P3)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site B, campaign 5, well P3
Platform:
GPL13409
Series:
GSE28608 GSE28609
Download data: PAIR
Sample
Accession:
GSM707971
ID:
300707971

5.

antisense mRNA from contaminated site B, campaign 5, well P2 (SBC5P2)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site B, campaign 5, well P2
Platform:
GPL13409
Series:
GSE28608 GSE28609
Download data: PAIR
Sample
Accession:
GSM707970
ID:
300707970

6.

antisense mRNA from contaminated site B, campaign 5, well P1 (SBC5P1)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site B, campaign 5, well P1
Platform:
GPL13409
Series:
GSE28608 GSE28609
Download data: PAIR
Sample
Accession:
GSM707969
ID:
300707969

7.

gDNA from contaminated site H, well P4 (SHP4)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site H, well P4
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707958
ID:
300707958

8.

gDNA from contaminated site H, well P3 (SHP3)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site H, well P3
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707957
ID:
300707957

9.

gDNA from contaminated site H, well P2 (SHP2)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site H, well P2
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707956
ID:
300707956

10.

gDNA from contaminated site H, well P1 (SHP1)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site H, well P1
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707955
ID:
300707955

11.

gDNA from contaminated site G, well P4 (SGP4)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site G, well P4
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707954
ID:
300707954

12.

gDNA from contaminated site G, well P3 (SGP3)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site G, well P3
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707953
ID:
300707953

13.

gDNA from contaminated site G, well P1 (SGP1)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site G, well P1
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707952
ID:
300707952

14.

gDNA from contaminated site F, well P4 (SFP4)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site F, well P4
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707951
ID:
300707951

15.

gDNA from contaminated site F, well P3 (SFP3)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site F, well P3
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707950
ID:
300707950

16.

gDNA from contaminated site F, well P2 (SFP2)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site F, well P2
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707949
ID:
300707949

17.

gDNA from contaminated site F, well P1 (SFP1)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site F, well P1
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707948
ID:
300707948

18.

gDNA from contaminated site B, campaign 5, well P4 (SBC5P4)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site B, campaign 5, well P4
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707947
ID:
300707947

19.

gDNA from contaminated site B, campaign 5, well P3 (SBC5P3)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site B, campaign 5, well P3
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707946
ID:
300707946

20.

gDNA from contaminated site B, campaign 5, well P2 (SBC5P2)

Organism:
groundwater metagenome
Source name:
Chlorinated solvent contaminated site B, campaign 5, well P2
Platform:
GPL13409
Series:
GSE28606 GSE28609
Download data: PAIR
Sample
Accession:
GSM707945
ID:
300707945

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