GEO DataSets

(Submitter supplied) In order to reveal temporal gene expression pattern in intact Dugesia japonica, we conducted high-thoriughput version of Tomo-Seq along the AP, DV, and LR axis.

Organism:

Dugesia japonica

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30183

157 Samples

Download data: CSV

(Submitter supplied) Time-course RNA-Seq of X-ray irradiated planarians Dugesia japonica.

Organism:

Dugesia japonica

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30183

18 Samples

Download data: CSV

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Dugesia japonica

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL32771 GPL30183

19 Samples

Download data: CSV

(Submitter supplied) A single cell RNA-Seq analysis of Dugesia japonica intact animals by TAS-Seq (Shichino et al, 2022)

Organism:

Dugesia japonica

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32771

1 Sample

Download data: CSV

(Submitter supplied) We accomplished de novo transcriptome assembly for planarian Dugesia japonica.

Organism:

Dugesia japonica

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32771

18 Samples

Download data: FASTA, XLSX

(Submitter supplied) We accomplished the m6A landscapes at single-base resolution with multiple time-points during AP axis regeneration for planarian Dugesia japonica.

Organism:

Dugesia japonica

Type:

Other

Platform:

GPL32771

19 Samples

Download data: FASTA, XLSX

(Submitter supplied) Background: The establishment of the anterior-posterior (A-P) axis is a crucial step during tissue repair and regeneration. Despite the association reported recently of N6-methyladenosine (m6A) with regeneration, the mechanism underlying the regulation of m6A in A-P axis specification during regeneration remains unknown. Herein, we deciphered the m6A landscape at a single-base resolution at multiple time points during A-P axis regeneration and constructed the de novo transcriptome assembly of the Dugesia japonica planarian.

Organism:

Dugesia japonica

Type:

Other; Expression profiling by high throughput sequencing

Platform:

GPL32771

37 Samples

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(Submitter supplied) We report RNA-seq results from planarians of Dugesia japonica species which have developed resistance to a S-adenosyl homocysteine hydrolase inhibitor AdOx after prolonged exposure.

Organism:

Dugesia japonica

Type:

Expression profiling by high throughput sequencing

Platform:

GPL28963

6 Samples

Download data: CSV, FASTA, TXT

(Submitter supplied) We employed RNA-sequencing with surgically resected planaria and cysteinyl-specialized pro-resolving mediators (cys-SPMs), including MCTR3, PCTR3 and RCTR3 to identify genes and pathways activated by cys-SPMs.

Organism:

Dugesia japonica

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29313

16 Samples

Download data: CSV

(Submitter supplied) Single-cell sequencing technologies are revolutionizing biology, but are limited by the need of dissociating fresh samples that can only be fixed at later stages. We present ACME (ACetic-MEthanol) dissociation, a species-versatile cell dissociation approach that fixes cells  as they are being dissociated. ACME-dissociated cells have high RNA integrity, can be cryopreserved multiple times, can be sorted by Fluorescence-Activated Cell Sorting (FACS) and are permeable, enabling combinatorial approaches of single-cell transcriptomics. more...

Organism:

Dugesia japonica; Schmidtea mediterranea

Type:

Expression profiling by high throughput sequencing

Platform:

GPL28515

3 Samples

Download data: GTF, TXT

(Submitter supplied) The development and maintenance of organismal form results from dynamic interactions between genome, protein interaction, physiology and the external environment. Bioelectric signaling represents an important epigenetic layer of control over processes of large-scale patterning during development and regeneration. However it is still largely unknown how physiological plasticity and adaptation operate during regenerative processes. more...

Organism:

Dugesia japonica

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16430

4 Samples

Download data: XLSX

(Submitter supplied) We applied Illumina sequencing to identify microRNAs (miRNAs) and piwi-interacting small RNAs (piRNAs) in Dugesia japonica. Dugesia were cut up after seven day’s starvation. DJ1 is the whole Dugesia body, DJ2 is the head part, DJ3 is the tail part, DJ4 is the left part and DJ5 is the right part. Total RNA was extracted by Trizol, and preserved in ethanol, stored at -80°C until further use.

Organism:

Dugesia japonica

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL16430

5 Samples

Download data: TXT

(Submitter supplied) Difficulty of experimental accessing makes in vivo stem cell studies not easy in mammals and model systems with regenerative capability represent an alternative for the characterization of stem cell-specific genes. Planarians retain a population of pluripotent stem cells, the neoblasts, throughout their adult life. Neoblasts can be selectively destroyed by X-ray allowing us to compare stem cell-less organisms with wild-type worms. more...

Organism:

Dugesia japonica

Type:

Expression profiling by array

Platform:

GPL4000

28 Samples

Download data: GPR, TXT