GEO DataSets

(Submitter supplied) In this study, a whole-genome CombiMatrix Custom oligonucleotide tiling microarray with 90000 probes covering six sequenced Helicobacter pylori(H. pylori) genomes was designed and utilized for comparative genomic profiling of eight unsequenced strains isolated from patients with different gastroduodenal diseases in Heilongjiang province of China. Since significant genomic variation were found among these strains, an additional 76 H. more...

Organism:

Helicobacter pylori; Helicobacter pylori 26695; Helicobacter pylori J99; Helicobacter pylori Shi470; Helicobacter pylori HPAG1; Helicobacter pylori G27; Helicobacter pylori P12

Type:

Genome variation profiling by genome tiling array

Platform:

GPL14380

9 Samples

Download data: TXT

(Submitter supplied) To distinguish between Helicobacter pylori isolates that may cause greater disease in patients, we used whole genome expression profiling as a platform to study host-pathogen interactions and identify gene signatures associated with isolates from patients with higher cancer risk.

Organism:

Homo sapiens; Helicobacter pylori HPAG1; Helicobacter pylori P12; Helicobacter pylori 26695; Helicobacter pylori Shi470; Helicobacter pylori B38; Helicobacter pylori J99; Helicobacter pylori G27

Type:

Expression profiling by array

Platform:

GPL16166

18 Samples

Download data: TXT

(Submitter supplied) 26695, J99, P12, G27, HPAG1, Shi470, B38 Arrays of this design have barcodes that begin with 16026851 or 2526851. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. more...

Organism:

Helicobacter pylori 26695; Helicobacter pylori J99; Helicobacter pylori HPAG1; Helicobacter pylori Shi470; Helicobacter pylori G27; Helicobacter pylori P12; Helicobacter pylori B38

1 Related Platform

Download data

(Submitter supplied) Probes are directly synthesized on a 90k Combimatrix array by an in situ oligo synthesis system developed by CombiMatrix Corporation (Mukilteo, USA) using the CombiMatrix CustomArray synthesizer. Standard synthesis protocol provided by CombiMatrix was used.

Organism:

Helicobacter pylori 26695; Helicobacter pylori J99; Helicobacter pylori HPAG1; Helicobacter pylori Shi470; Helicobacter pylori G27; Helicobacter pylori P12

1 Series

9 Samples

Download data: PDF, TXT

(Submitter supplied) 26695, J99, P12, G27, HPAG1, Shi470, B38 Arrays of this design have barcodes that begin with 16026851 or 2526851. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Entrez Gene ID number. more...

Organism:

Helicobacter pylori 26695; Helicobacter pylori J99; Helicobacter pylori HPAG1; Helicobacter pylori Shi470; Helicobacter pylori G27; Helicobacter pylori P12; Helicobacter pylori B38

1 Series

1 Related Platform

18 Samples

Download data