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GEO DataSets

Functional Genomics Studies

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Select item 2002520081.

Growth, enzymatic, and transcriptomic analysis of xyr1 deletion reveals a major regulator of plant biomass-degrading enzymes in Trichoderma harzianum

(Submitter supplied) The regulation of plant biomass degradation by fungi is critical to the carbon cycle, and applications in bioproducts and biocontrol. Trichoderma harzianum is an important plant biomass degrader, enzyme producer, and biocontrol agent, but few putative major transcriptional regulators have been deleted in this species. The T. harzianum ortholog of the transcriptional activator XYR1/XlnR/XLR-1 was deleted, and the mutant strains were analyzed by growth profiling, enzymatic activities, and transcriptomics on cellulose. more...

Organism:: Trichoderma harzianum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34038
18 Samples

Download data: TXT

Series

Accession:: GSE252008

ID:: 200252008

PubMed Full text in PMC Similar studies

Select item 2002292092.

Plant recognition by Trichoderma harzianum elicits upregulation of a novel secondary metabolite cluster required for colonization

(Submitter supplied) The plant recognition specific PCA cluster mediates early chemical communication between plant and fungus, is required for colonization and it is likely responsible for the high potential of T. harzianum and closely related species for biocontrol applications.

Organism:: Trichoderma harzianum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33322
6 Samples

Download data: CSV

Series

Accession:: GSE229209

ID:: 200229209

Select item 2000291713.

Comparative study of transcriptomes from four Trichoderma strains gene expression in early interaction with tomato plants

(Submitter supplied) A self-designed Trichoderma high density oligonuclotide (HDO) microarray (Roche-NimbleGen, Inc., Madison, WI, USA) was constructed in a similar way than a previous Trichoderma HDO microarray (Samolski et al., 2009). The microarray was composed of 392,779 60-mer probes designed against 14,081 EST-derived transcripts (Trichochip-1) and the genomes of T. reesei (9,129 genes) and T. virens (11,643 genes). more...

Organism:: Trichoderma hamatum; Trichoderma reesei; Trichoderma virens; Trichoderma harzianum

Type:: Expression profiling by array

Platform:: GPL13511
24 Samples

Download data: CALLS, PAIR

Series

Accession:: GSE29171

ID:: 200029171

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000246304.

Expression array for Trichoderma harzianum T34 and nox1 overexpressed transformant Tnox5 strains in dual culture with Pythium ultimum

(Submitter supplied) A self-designed Trichoderma high density oligonuclotide (HDO) microarray (Roche-NimbleGen, Inc., Madison, WI, USA) was constructed in a similar way than a previous Trichoderma HDO microarray (Samolski et al., 2009). The microarray was composed of 392,779 60-mer probes designed against 13,443 EST-derived transcripts (Trichochip-1) and the genomes of T. atroviride (11,100 genes) and T. virens (11,643 genes). more...