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Items: 1 to 20 of 36

1.

High nucleotide substitution rates associated with retrotransposon proliferation drive dynamic secretome evolution in smut pathogens

(Submitter supplied) Transposable elements (TEs) play a pivotal role in shaping diversity in eukaryotic genomes. The covered smut pathogen on barley, Ustilago hordei, encountered a recent genome expansion. Using long reads, we assembled genomes of 6 U. hordei strains and 3 sister species, to study this genome expansion. We found that larger genome sizes can mainly be attributed to a higher genome fraction of long terminal repeat retrotransposons (LTR-RTs). more...
Organism:
Ustilago hordei
Type:
Expression profiling by high throughput sequencing
Platform:
GPL32374
6 Samples
Download data: TXT
Series
Accession:
GSE206526
ID:
200206526
2.

Mining the effector repertoire of the biotrophic fungal pathogen Ustilago hordei during host and non-host infection

(Submitter supplied) The success of plant pathogenic fungi mostly relies on their arsenal of virulence factors that are expressed and delivered into the host tissue during colonization. The biotrophic fungal pathogen Ustilago hordei causes covered smut disease on both barley and oat. The biotrophic interaction of the fungus with its host plant starts with formation of appressorium and subsequent penetration of invasive hyphae into the plant cell, in which the plasma membrane of the infected cell gets invaginated and encases the penetrating hypha. more...
Organism:
Ustilago hordei
Type:
Expression profiling by array
Platform:
GPL25345
18 Samples
Download data: TXT
Series
Accession:
GSE117325
ID:
200117325
3.

Global transcriptional profiling of Ustilago bromivora during axenic growth and pathogenic development

(Submitter supplied) To provide insights into expression patterns of the genes encoding putatively secreted proteins in U. bromivora during saprophytic growth and in planta, we conducted RNA-seq analyses. To this end, we isolated RNA from axenic U. bromivora UB1 culture and from stems of twelve day old B. hybridum Bd28 plants that were spore-inoculated with U. bromivora. Among the 6756 transcripts found to be expressed in our dataset, 493 were significantly upregulated in planta compared to axenic culture (logFC > 2, adjusted p-value < 0.1), while 1138 transcripts were significantly downregulated. more...
Organism:
Ustilago bromivora
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22538
6 Samples
Download data: TXT
Series
Accession:
GSE87751
ID:
200087751
4.

Illumina NovaSeq 6000 (Ustilago hordei)

Organism:
Ustilago hordei
1 Series
6 Samples
Download data
Platform
Accession:
GPL32374
ID:
100032374
5.

Agilent-031104 mpi_uhordei_01 031103

(Submitter supplied) Ustilago hordei 3' expression array version 1.0 Arrays of this design have barcodes that begin with 16031104 or 2531104. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. more...
Organism:
Ustilago hordei
1 Series
18 Samples
Download data
Platform
Accession:
GPL25345
ID:
100025345
6.

Illumina HiSeq 2000 (Ustilago bromivora)

Organism:
Ustilago bromivora
1 Series
6 Samples
Download data
Platform
Accession:
GPL22538
ID:
100022538
7.

Barley_3dpi_3

Organism:
Ustilago hordei
Source name:
Infected barley leaves
Platform:
GPL32374
Series:
GSE206526
Download data
Sample
Accession:
GSM6255851
ID:
306255851
8.

Barley_3dpi_2

Organism:
Ustilago hordei
Source name:
Infected barley leaves
Platform:
GPL32374
Series:
GSE206526
Download data
Sample
Accession:
GSM6255850
ID:
306255850
9.

Barley_3dpi_1

Organism:
Ustilago hordei
Source name:
Infected barley leaves
Platform:
GPL32374
Series:
GSE206526
Download data
Sample
Accession:
GSM6255849
ID:
306255849
10.

Axenic_YEPSlight_3

Organism:
Ustilago hordei
Source name:
fungal tissue
Platform:
GPL32374
Series:
GSE206526
Download data
Sample
Accession:
GSM6255848
ID:
306255848
11.

Axenic_YEPSlight_2

Organism:
Ustilago hordei
Source name:
fungal tissue
Platform:
GPL32374
Series:
GSE206526
Download data
Sample
Accession:
GSM6255847
ID:
306255847
12.

Axenic_YEPSlight_1

Organism:
Ustilago hordei
Source name:
fungal tissue
Platform:
GPL32374
Series:
GSE206526
Download data
Sample
Accession:
GSM6255846
ID:
306255846
13.

Uhordei_infectedMaizeSeedling_20hpi_R3

Organism:
Ustilago hordei
Source name:
U. hordei infected maize seedling at 20 hpi
Platform:
GPL25345
Series:
GSE117325
Download data: TXT
Sample
Accession:
GSM3291043
ID:
303291043
14.

Uhordei_infectedMaizeSeedling_20hpi_R2

Organism:
Ustilago hordei
Source name:
U. hordei infected maize seedling at 20 hpi
Platform:
GPL25345
Series:
GSE117325
Download data: TXT
Sample
Accession:
GSM3291042
ID:
303291042
15.

Uhordei_infectedMaizeSeedling_20hpi_R1

Organism:
Ustilago hordei
Source name:
U. hordei infected maize seedling at 20 hpi
Platform:
GPL25345
Series:
GSE117325
Download data: TXT
Sample
Accession:
GSM3291041
ID:
303291041
16.

Uhordei_infectedBarleySeedling_6dpi_R3

Organism:
Ustilago hordei
Source name:
U. hordei infected barley seedling at 6 dpi
Platform:
GPL25345
Series:
GSE117325
Download data: TXT
Sample
Accession:
GSM3291040
ID:
303291040
17.

Uhordei_infectedBarleySeedling_6dpi_R2

Organism:
Ustilago hordei
Source name:
U. hordei infected barley seedling at 6 dpi
Platform:
GPL25345
Series:
GSE117325
Download data: TXT
Sample
Accession:
GSM3291039
ID:
303291039
18.

Uhordei_infectedBarleySeedling_6dpi_R1

Organism:
Ustilago hordei
Source name:
U. hordei infected barley seedling at 6 dpi
Platform:
GPL25345
Series:
GSE117325
Download data: TXT
Sample
Accession:
GSM3291038
ID:
303291038
19.

Uhordei_infectedBarleySeedling_3dpi_R3

Organism:
Ustilago hordei
Source name:
U. hordei infected barley seedling at 3 dpi
Platform:
GPL25345
Series:
GSE117325
Download data: TXT
Sample
Accession:
GSM3291037
ID:
303291037
20.

Uhordei_infectedBarleySeedling_3dpi_R2

Organism:
Ustilago hordei
Source name:
U. hordei infected barley seedling at 3 dpi
Platform:
GPL25345
Series:
GSE117325
Download data: TXT
Sample
Accession:
GSM3291036
ID:
303291036
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