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Items: 3

1.

Dnmt1-Independent CG Methylation Contributes to Nucleosome Positioning in Diverse Eukaryotes

(Submitter supplied) Dnmt1 epigenetically propagates symmetrical CG methylation in many eukaryotes. Their genomes are typically depleted of CG dinucleotides because of imperfect repair of deaminated methylcytosines. Here, we extensively survey diverse species lacking Dnmt1 and show that, surprisingly, symmetrical CG methylation is nonetheless frequently present and catalyzed by a different DNA methyltransferase family, Dnmt5. more...
Organism:
Leishmania major; Thalassiosira pseudonana; Cyanidioschyzon merolae; Bathycoccus prasinos; Cryptococcus neoformans var. grubii; Fragilariopsis cylindrus; Phaeodactylum tricornutum; Emiliania huxleyi; Micromonas pusilla; Aureococcus anophagefferens; Ostreococcus sp. 'lucimarinus'
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
12 related Platforms
26 Samples
Download data: GFF, GTF
Series
Accession:
GSE46692
ID:
200046692
2.

Illumina HiSeq 2000 (Bathycoccus prasinos)

Organism:
Bathycoccus prasinos
1 Series
1 Sample
Download data
Platform
Accession:
GPL18353
ID:
100018353
3.

B. prasinos bisulfite sequencing

Organism:
Bathycoccus prasinos
Source name:
Whole cells
Platform:
GPL18353
Series:
GSE46692
Download data: GFF
Sample
Accession:
GSM1337409
ID:
301337409
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Supplemental Content

db=gds|term=txid41875[Organism]|query=3|qty=12|blobid=MCID_6729ec83098d4d345912a1ef|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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