txid3726[Organism] - GEO DataSets

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Select item 2002703511.

The Molecular Mechanisms of m6A Methylation Modification in Regulating Bolting and Flowering in Radish

(Submitter supplied) N6-methyladenosine (m6A) is a crucial epigenetic modification in mRNA and the most abundant methylation in eukaryotes. However, research on m6A modification in radish (Raphanus sativus) is not as extensive as in model plants. In this study, we analyzed m6A modification during the vegetative and reproductive growth stages of radish using m6A-seq and RNA-seq to explore its potential role in bolting and flowering. more...

Organism:: Raphanus sativus

Type:: Expression profiling by high throughput sequencing; Other

Platform:: GPL30556
12 Samples

Download data: TXT

Series

Accession:: GSE270351

ID:: 200270351

Select item 2002613032.

Genome-wide analysis of the lncRNAs and miRNAs involved in flower development in radish

(Submitter supplied) To further verify the differences in IncRNA and miRNA during radish flowering, we conducted transcriptome analysis on samples taken before and after radish flowering. Obtain IncRNA and miRNA from the differential table and perform qRT-PCR validation on them.

Organism:: Raphanus sativus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL30556
6 Samples

Download data: TXT

Series

Accession:: GSE261303

ID:: 200261303

Select item 2002397353.

Insertional mutations on RsFLC2 compromises vernalization response of radish (Raphanus sativus L.)

(Submitter supplied) In this study, scientific efforts to grasp molecular details underlying vernalization-triggered floral transition were undertaken in radish (Raphanus sativus L.). We performed a comparative transcriptomic analysis between normal flowering ‘Jinjudaepyung’ and very late flowering inbred line, ‘Simu’.

Organism:: Raphanus sativus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL30556
18 Samples

Download data: BW

Series

Accession:: GSE239735

ID:: 200239735

Select item 2001828854.

RNA-seqencing datasets for three different vernalization time course of radish

(Submitter supplied) We report here NGS RNA-seqencing datasets for htree different vernalization time course of radish cultivar, "Taebaek".

Organism:: Raphanus sativus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL30556
9 Samples

Download data: TXT

Series

Accession:: GSE182885

ID:: 200182885

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001258755.

Transcriptome analysis of flowering variation with or without Gibberellin (GA) in two inbred lines of korea radish

(Submitter supplied) We analyze that the flowering integrators, FT and SOC, change to expression by GA treatment

Organism:: Raphanus sativus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22620
8 Samples

Download data: XLSX

Series

Accession:: GSE125875

ID:: 200125875

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000893126.

The flowering-related genes responsible for differences in bolting time between two radish lines

(Submitter supplied) To elucidate the molecular mechanisms that determine the differences in flowering times between two radish lines, NH-JS1 (late bolting) and NH-JS2 (early bolting) by high-throughput RNA sequencing analysis. In total, 71,188 unigenes were identified by reference-guided assembly, of which 309, 788, and 980 genes were differentially expressed between the two inbred lines after 0, 15, and 35 days of vernalization, respectively.

Organism:: Raphanus sativus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22620
12 Samples

Download data: FA, TXT

Series

Accession:: GSE89312

ID:: 200089312

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000938797.

De novo Assembly and Comparative Analysis of Ten Petal Transcriptome (Brassicaceae) Revealed Phylogenetic Relationships and Genetic control of Flower Color Variation

(Submitter supplied) Petal is not only the target of selection by horticulturalists to enhance the ornamental value of plants but also emerged as a unique model system for plant organogenesis studies. It is known that three major groups of pigments, betalains, carotenoids and anthocyanins, are responsible for the attractive natural display of flower colors. While carotenoids and betalains generally yield yellow or red colors, anthocyanins confer a diverse range of color from orange to red to violet and blue. more...

Organism:: Raphanus sativus; Eruca vesicaria subsp. sativa; Erysimum cheiri; Brassica oleracea; Matthiola incana; Lobularia maritima; Aubrieta x cultorum; Orychophragmus violaceus; Iberis amara; Malcolmia maritima

Type:: Expression profiling by high throughput sequencing

10 related Platforms
44 Samples

Download data: XLS

Series

Accession:: GSE93879

ID:: 200093879

SRA Run Selector

Select item 2000651428.

Identification of differentially expressed genes related to cytoplasmic male sterility in radish (Raphanus sativus L.) by comparative transcriptome analysis

(Submitter supplied) Cytoplasmic male sterility (CMS), a typically maternally inherited trait, causes a failure in producing functional pollen. Although the radish CMS has be widely used to produce hybrid varieties in breeding program, the molecular mechanism of CMS in radish is poorly understood. In this study, two radish CMS lines (HYBP-A and YH-A) and their corresponding maintainer lines (HYBP-B and YH-B) were used to identify genes potentially involving in CMS using Illumina pair-end sequencing. more...