GEO DataSets

(Submitter supplied) cDNA libraries of Melon fruits produced in different locations in the USA

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30269

62 Samples

Download data: CSV

(Submitter supplied) Jiashi melon and 86-1 melon were inoculated with Alternaria alternata, and the difference of gene expression was analyzed after 0, 6, 12, 18 and 24 days storage.

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33211

60 Samples

Download data: TXT

(Submitter supplied) Melon is a globally commercialized fruit, and Fusarium rot disease poses a significant threat to post-harvest losses. The conventional use of fungicides raises concerns about chemical residues, prompting exploration into alternative technologies such as Pulsed Light (PL). While PL has been effective in controlling infections in various fruits and vegetables, the precise physiological responses and molecular mechanisms in melon fruits remain incompletely understood. more...

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL34242

18 Samples

Download data: TXT

(Submitter supplied) Strigolactone (SL) and auxin are two important phytohormones involved in plant root development, but whether they show synergistic or mutual promotion effects during adventitious root (AR) formation has not been adequately explored.

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33469

9 Samples

Download data: TXT

(Submitter supplied) The physiological indicators, transcriptome, and metabolome of two melon varieties with contrasting chilling tolerance (‘162’, chilling-tolerant; ‘13-5A’ ,chilling-sensitive) were analyzed under chilling stress.

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30269

12 Samples

Download data: TXT

(Submitter supplied) To investigate transcript abundance of flavor-associated genes in fatty acid and amino acid pathways after chilling. We then performed gene expression profiling analysis using data obtained from RNA-seq of 3 different treatments [(A) stored at 4°C for 7 d (without chilling injury), and then transferred to room temperature (~22°C) for 1 d; (B) held at 4°C for 8 d until use (without chilling injury); (C) harvested on day 8 (8 d after the fruits of first two groups). more...

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30269

9 Samples

Download data: XLSX

(Submitter supplied) To analyze the molecular mechanism underlying flesh color formation in different color melon.

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30269

18 Samples

Download data: TXT

(Submitter supplied) We report the application of a high-throughput technique, RNA-seq, to study the transcriptomic response of cucumis melo seeds and leaves to the treatment with B. subtilis cells or the secondary metabolite fengycin

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18680

12 Samples

Download data: XLSX

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL21359

13 Samples

Download data: BIGWIG, BW, TXT

(Submitter supplied) Purpose: We conducted a reverse genetic approach in order to elucidate the role of H3K27me3 writers and erasers in the process of sex determination and expression in melon. Methods: We used TILLING to find loss-of function mutants of cmLHP1 proteins in melon. Selected alleles were phenotyped at the developmental and molecular levels. We generated the cmlhp1ab mutant, for which we observed a pleiotropic phenotype. more...

Organism:

Cucumis melo

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL21359

7 Samples

Download data: BIGWIG, BW

(Submitter supplied) Purpose: We conducted a reverse genetic approach in order to elucidate the role of H3K27me3 writers and erasers in the process of sex determination and expression in melon. Methods: We used TILLING to find loss-of function mutants of cmLHP1 proteins in melon. Selected alleles were phenotyped at the developmental and molecular levels. We generated the cmlhp1ab mutant, for which we observed a pleiotropic phenotype. more...

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL21359

6 Samples

Download data: TXT

(Submitter supplied) Purpose: the goals of this study are to compare fruit of two clitivars oriental melon transcriptome profiling (RNA-seq) at different stages to explore carotenoid potentail carotenoid accumulation mechanism Methods:The transcriptome sequence of two cultivars oriental melon fruits at different stages were generated by deep sequencing with three repeats using Illumina. The sequence reads that passed filters were mapped to melon genome (http://cucurbitgenomics.org/organism/18) using HISAT2 software. more...

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18680

30 Samples

Download data: TXT

(Submitter supplied) cDNA libraries of Melon leaves and fruits at the different stage

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30269

27 Samples

Download data: CSV

(Submitter supplied) The object of this study was to integrate physiological characteristics and genome-wide transcriptome analysis to understand the molecular basis of genetic variation in response to salt stress in melon. The comparison of transcriptome showed a number of variety-specific responsive genes were related to salt tolerance.

Organism:

Cucumis melo

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18680

4 Samples

Download data: TXT

(Submitter supplied) Fleshy fruits evolved independently multiple times during angiosperm history, including the use of ethylene for the initiation and maintenance of ripening. ENCODE data of 355 transcriptome, 66 accessible chromatin, 160 histone and 45 DNA methylation profiles from eleven fleshy fruit species revealed three types of transcriptional feedback loops controlling ripening. Eudicots peach, papaya and melon evolved their circuits using carpel senescence NAC genes, whereas tomato, apple and pear utilized floral identity MADS genes derived from recent whole-genome-duplications. more...

Organism:

Citrullus lanatus; Cucumis melo; Cucumis sativus; Arabidopsis thaliana; Malus domestica; Solanum lycopersicum; Musa acuminata AAA Group; Carica papaya; Prunus persica; Oryza sativa; Fragaria vesca; Pyrus x bretschneideri; Vitis vinifera

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

18 related Platforms

282 Samples

Download data: BW, NARROWPEAK, TBI, TXT

(Submitter supplied) In this study, we found that the highly expressed miRNAs appear in EPDELNs (Edible plant-derived exosome-like nanoparticles) have the potential to regulate human mRNA in a cross-kingdom manner. Target prediction and functional analysis revealed that highly expressed miRNAs were closely associated with inflammatory responses and cancer-related pathways. Therefore, we hypothesized that miRNAs in EPDELNs may be a crucial factor behind the regulatory function of EPDELNs.

Organism:

Glycine max; Zingiber officinale; Pyrus; Citrus reticulata; Actinidia chinensis; Cucumis melo; Pisum sativum; Vaccinium; Cocos nucifera; Citrus x paradisi; Solanum lycopersicum

Type:

Non-coding RNA profiling by high throughput sequencing

11 related Platforms

11 Samples

Download data: TXT, XLSX

(Submitter supplied) Background: MicroRNAs (miRNAs) represent a family of small endogenous, non-coding RNAs that play critical regulatory roles in plant growth, development, and environmental stress responses. Although Hami melon is an attractive model for valuable biological traits analysis, the role of miRNA action in the fruit development and ripening remains largely unknown. Here, we performed small RNA sequencing to investigate the Hami melon miRNA profiles at four fruit developmental stages Results: Small RNA sequencing yielded raw reads in eight libraries. more...

Organism:

Cucumis melo

Type:

Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL21358 GPL21359

8 Samples

Download data: TXT

(Submitter supplied) Organ-specific landscapes of H3K9ac and H3K27me3 in melon

Organism:

Cucumis melo var. cantalupo

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL23346

37 Samples

Download data: TXT, WIG

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Cucumis melo

Type:

Expression profiling by array

Platform:

GPL13748

52 Samples

Download data: PAIR

(Submitter supplied) Viruses are among the most destructive and difficult to control plant pathogens. Melon (Cucumismelo L.) has become the model species for the agriculturally important Cucurbitaceae family. Approaches that take advantage of recently developed genomic tools in melon are being extremely useful for understanding viral pathogenesis and can contribute to the identification of target genes to breed new resistant cultivars. more...

Organism:

Cucumis melo

Type:

Expression profiling by array

Platform:

GPL13748

22 Samples

Download data: PAIR