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Items: 1 to 20 of 28

1.

transcriptome of Amycolatopsis mediterranei U32 in the Bennet medium with or without nitrate

(Submitter supplied) We reported transcriptome profiles of rifamycin SV-produced strain Amycolatopsis mediterranei U32 in the Bennet medium with or without 80 mM nitrate in different cultivation stage. By comparative analysis of genome-wide gene expression in these conditions, we found that the mechanism of high production of rifamycin SV induced by nitrate could be elucidated.
Organism:
Amycolatopsis mediterranei U32
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19434
4 Samples
Download data: XLS
Series
Accession:
GSE63313
ID:
200063313

SRA Run Selector

2.

Comparative genomics reveals new molecular targets for accelerated strain improvement of rifamycin B-producing strains

(Submitter supplied) In the present study, we have used a genomic approach to understand how the classical mutate-and-screen method actually generated an improved rifamycin B producer. Compared with the reference strains Amycolatopsis mediterranei S699 (rifamycin B producer) and U32 (rifamycin SV producer), a total of 250 variations affecting a total of 227 coding sequences (CDS) were found in rifamycin B overproducing strain HP-130. more...
Organism:
Amycolatopsis mediterranei S699
Type:
Expression profiling by array
Platform:
GPL17744
20 Samples
Download data: CEL
Series
Accession:
GSE51015
ID:
200051015

PubMed Similar studies Analyze with GEO2R

3.

Illumina HiSeq 2500 (Amycolatopsis mediterranei U32)

Organism:
Amycolatopsis mediterranei U32
1 Series
4 Samples
Download data
Platform
Accession:
GPL19434
ID:
100019434

4.

[AMEDS_expr] Custom Affymetrix Amycolatopsis mediterranei S699 10k chip

(Submitter supplied) in situ oligonucleotide synthesis (see manufacturer's web site)
Organism:
Amycolatopsis mediterranei S699
1 Series
20 Samples
Download data: CDF
Platform
Accession:
GPL17744
ID:
100017744

5.

U32-48K

Organism:
Amycolatopsis mediterranei U32
Source name:
single microbial cell
Platform:
GPL19434
Series:
GSE63313
Download data
Sample
Accession:
GSM1545656
ID:
301545656

SRA Run Selector

6.

U32-48B

Organism:
Amycolatopsis mediterranei U32
Source name:
single microbial cell
Platform:
GPL19434
Series:
GSE63313
Download data
Sample
Accession:
GSM1545655
ID:
301545655

SRA Run Selector

7.

U32-24K

Organism:
Amycolatopsis mediterranei U32
Source name:
single microbial cell
Platform:
GPL19434
Series:
GSE63313
Download data
Sample
Accession:
GSM1545654
ID:
301545654

SRA Run Selector

8.

U32-24B

Organism:
Amycolatopsis mediterranei U32
Source name:
single microbial cell
Platform:
GPL19434
Series:
GSE63313
Download data
Sample
Accession:
GSM1545653
ID:
301545653

SRA Run Selector

9.

Amycolatopsis_WT_T5B

Organism:
Amycolatopsis mediterranei S699
Source name:
Wild type, 72h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234888
ID:
301234888

10.

Amycolatopsis_WT_T5A

Organism:
Amycolatopsis mediterranei S699
Source name:
Wild type, 72h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234887
ID:
301234887

11.

Amycolatopsis_WT_T4B

Organism:
Amycolatopsis mediterranei S699
Source name:
Wild type, 60h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234886
ID:
301234886

12.

Amycolatopsis_WT_T4A

Organism:
Amycolatopsis mediterranei S699
Source name:
Wild type, 60h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234885
ID:
301234885

13.

Amycolatopsis_WT_T3B

Organism:
Amycolatopsis mediterranei S699
Source name:
Wild type, 48h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234884
ID:
301234884

14.

Amycolatopsis_WT_T3A

Organism:
Amycolatopsis mediterranei S699
Source name:
Wild type, 48h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234883
ID:
301234883

15.

Amycolatopsis_WT_T2B

Organism:
Amycolatopsis mediterranei S699
Source name:
Wild type, 36h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234882
ID:
301234882

16.

Amycolatopsis_WT_T2A

Organism:
Amycolatopsis mediterranei S699
Source name:
Wild type, 36h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234881
ID:
301234881

17.

Amycolatopsis_WT_T1B

Organism:
Amycolatopsis mediterranei S699
Source name:
Wild type, 24h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234880
ID:
301234880

18.

Amycolatopsis_WT_T1A

Organism:
Amycolatopsis mediterranei S699
Source name:
Wild type, 24h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234879
ID:
301234879

19.

Amycolatopsis_HP-130_T5B

Organism:
Amycolatopsis mediterranei S699
Source name:
improved rifamycin B producer, 72h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234878
ID:
301234878

20.

Amycolatopsis_HP-130_T5A

Organism:
Amycolatopsis mediterranei S699
Source name:
improved rifamycin B producer, 72h
Platform:
GPL17744
Series:
GSE51015
Download data: CEL
Sample
Accession:
GSM1234877
ID:
301234877

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