txid29729[Organism] - GEO DataSets

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Select item 2002262181.

Transcriptional Landscape of Cottont Roots in Response to Salt Stress at Single-cell Resolution

(Submitter supplied) Increasing soil salinization has led to severe losses of plant yield and quality. Researching the formation of plant salt tolerance and the molecular mechanism of the salt stress response is therefore urgent. We here take advantage of recent progress in single-cell transcriptomics technology to systematically analyze plant roots response to salt stress, and 57,185 high-quality cells were totally obtained from 5-day-old lateral root tips of Gossypium arboreum under natural growth and different salt-treatment conditions. more...

Organism:: Gossypium arboreum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33192
8 Samples

Download data: MTX, TSV

Series

Accession:: GSE226218

ID:: 200226218

Select item 2001169082.

Drougt Specfic oligonucleotide array Development for drought response study in Gossypium Species

(Submitter supplied) Drought is one of the primary limiting factors affecting the growth and yield of cotton. Studying the genotypic drought response of plant towards stress stimuli necessitates the development of a standardized, comprehensive and cohesive system that specifically captures information regarding the focal purpose. In-house development of drought specific microarray using drought specific oligonucleotide probes was carried out and the leaf and root tissue of the two-important species Gossypium arboreum and Gossypium hirsutum were tested for genetic traits responses under 10 days’ drought stress. more...

Organism:: Gossypium arboreum; Gossypium; Gossypium hirsutum

Type:: Expression profiling by array

Platform:: GPL25315
24 Samples

Download data: TXT

Series

Accession:: GSE116908

ID:: 200116908

Analyze with GEO2R

Select item 2000811343.

Expression data from 10 DPA fibers

(Submitter supplied) Upland cotton (Gossypium hirsutum L.) is the most important fiber crop, and its lint yield improvement is impeded due to its narrow genetic base and the lack of understanding of the genetic basis of yield. Backcross inbred lines (BILs) or near-isogenic lines (NILs) in the same genetic background differing in lint yield, developed through advanced backcrossing, provide an important genomic resource to study the molecular genetic basis of lint yield. more...

Organism:: Gossypium barbadense; Gossypium raimondii; Gossypium hirsutum; Gossypium arboreum

Type:: Expression profiling by array

Platform:: GPL8672
8 Samples

Download data: CEL

Series

Accession:: GSE81134

ID:: 200081134

Analyze with GEO2R

Select item 2000621584.

Dynamic transcriptome analysis and volatile profiling of Gossypium hirsutum in response to the cotton bollworm Helicoverpa armigera

(Submitter supplied) Cotton seeds (Gossypium hirsutum cv. CCRI12) were grown in a growth chamber under 29/25°C temperature and a 16:8 h light:dark cycle, and water was added every two days. All plants were used in experiments at the 6-7 fully expanded true leaf stage, which occurred 5-6 weeks after sowing. Cotton bollworm (CBW; Helicoverpa armigera) larvae were reared on an artificial diet and maintained at 27 ± 2°C, 75 ± 10% relative humidity, and 14:10 h light:dark in the laboratory. more...

Organism:: Gossypium barbadense; Gossypium arboreum; Gossypium hirsutum; Gossypium raimondii

Type:: Expression profiling by array

Platform:: GPL8672
24 Samples

Download data: CEL

Series

Accession:: GSE62158

ID:: 200062158

Analyze with GEO2R

Select item 2000744125.

Expression data from the process of chilling stress causing Alternaria alternata infection and leading to cotton leaf senescence

(Submitter supplied) Cotton premature leaf senescence often occurred with an increasing frequency in many cotton growing areas and caused serious reduction in yield and quality of cotton has been one of the impontant factors that restrict severely the production of cotton.Our laboratory studies showed chilling stress is the key factor that induced A. alternatia infection, caused Alternaria disease and then lead to cotton leaf senescence, but the molecular mechanism of cotton premature leaf senscence is still unclear. more...

Organism:: Gossypium barbadense; Gossypium raimondii; Gossypium arboreum; Gossypium hirsutum

Type:: Expression profiling by array

Platform:: GPL8672
24 Samples

Download data: CEL

Series

Accession:: GSE74412

ID:: 200074412

Analyze with GEO2R

Select item 2000662516.

Differentiation of fiber initials on cotton ovules

(Submitter supplied) Transcriptional profiling of cotton ovule cells. Comparison of expression of genes in cultured ovules (-1 DPA) treated with or without phytohormones (5um IAA and 1um GA) and over a time-course from 0 to 12 hours.

Organism:: Gossypium hirsutum; Gossypium arboreum; Gossypium raimondii

Type:: Expression profiling by array

Platform:: GPL8062
40 Samples

Download data: GPR

Series

Accession:: GSE66251

ID:: 200066251

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000152797.

Studies of wax genes in cotton (Gossypium arboreum)

(Submitter supplied) The aim of the present study is to list the genes involved in cotton (G. arboreum) leaf epicuticular wax production and deposition. For this purpose differentially expressed genes (especially, down-regulated in wax deficient mutant plant) in wild and epicuticular wax mutant (Gawm3) plants were founded through cDNA microarray, developed from the wild plant leaves.

Organism:: Gossypium arboreum

Type:: Expression profiling by array

Platform:: GPL8266
6 Samples

Download data: TXT

Series

Accession:: GSE15279

ID:: 200015279

Analyze with GEO2R

Select item 2000555118.

Comparative transcriptome profiles of cotton (G. hirsutum L. cv. Bikaneri narma) during boll development stages under bollworm infested biotic stress

(Submitter supplied) Comparative transcriptome profiles of cotton (G. hirsutum L. cv. Bikaneri narma) during boll development stages (0, 2, 5 and 10 dpa) under bollworm infested biotic stress. Cotton is one of the most commercially important fibre crops in the world and used as a source for natural textile fibre and cottonseed oil. The biotic stress is one of the major constraints for crop production. Cotton bollworm (Helicoverpa armigera) is one the major insect pest in cotton and drastically damages the cotton boll. more...

Organism:: Gossypium barbadense; Gossypium raimondii; Gossypium arboreum; Gossypium hirsutum

Type:: Expression profiling by array

Platform:: GPL8672
24 Samples

Download data: CEL, CHP

Series

Accession:: GSE55511

ID:: 200055511

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000524329.

Comparative analysis of transcriptome profiles of G. arboreum L. cv. and its fuzzy-lintless mutant (ANOI 1960) during fibre development stages.

(Submitter supplied) Comparative analysis of transcriptome profiles of G. arboreum L. cv. and its fuzzy-lintless mutant (ANOI 1960) at 0 and 10 dpa. Cotton is one of the most commercially important fibre crops in the world and used as a source for natural textile fibre and cottonseed oil. The fuzzy-lintless ovules of cotton mutants are ideal source for identifying genes involved in fibre development by comparing with fibre bearing ovules of wild-type. more...

Organism:: Gossypium arboreum; Gossypium barbadense; Gossypium hirsutum; Gossypium raimondii

Type:: Expression profiling by array

Platform:: GPL8672
12 Samples

Download data: CEL, CHP

Series

Accession:: GSE52432

ID:: 200052432

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20005177910.

Identification of anther expressing genes in cotton (Gossypium hirsutum)

(Submitter supplied) This study was initiated with the objective of identifying the anther/tapetum specific promoters from cotton floral buds. Cotton is an important commercial crop. Hybrid cotton varieties are developed to obtain improved yield and fiber quality. Most of the hybrid seed production in cotton is carried out by hand emasculation, which requires large amount of manpower, resulting in high cost of hybrid seed. more...

Organism:: Gossypium hirsutum; Gossypium arboreum; Gossypium raimondii; Gossypium barbadense

Type:: Expression profiling by array

Platform:: GPL8672
24 Samples

Download data: CEL

Series

Accession:: GSE51779

ID:: 200051779

Analyze with GEO2R

Select item 20005077011.

Transcriptome analysis reveals crosstalk of responsive genes to multiple abiotic stresses in cotton (Gossypium hirsutum L.)

(Submitter supplied) Abiotic stress is a major environmental factor that limits cotton growth and yield, moreover, this problem has become more and more serious recently and multiple stresses often occur simultaneously due to the global climate change and environmental pollution. We used microarrays to analyze the crosstalk of responsive genes to multiple abiotic stresses including ABA, cold, drought, salinity and alkalinity in cotton.

Organism:: Gossypium hirsutum; Gossypium raimondii; Gossypium barbadense; Gossypium arboreum

Type:: Expression profiling by array

Platform:: GPL8672
17 Samples

Download data: CEL, CHP

Series

Accession:: GSE50770

ID:: 200050770

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20004352812.

affy_cotton_2011_12-Comparative transcriptional profiling of cotton fibers in Gossypium hirsutum and Gossypium barbadense using EST pyrosequencing and microarray hybridization

(Submitter supplied) affy_cotton_2011_12 - affy_cotton_2011_12 - In this study we characterized the fiber transcriptomes of the two species, Gossypium hirsutum and Gossypium barbadense that were parental genotypes of a RIL mapping population used previously for phenotypic QTL and expression QTL mapping., We used 454 deep pyrosequencing to characterize cDNAs from developing fibers at two key developmental time-points; 10 and 22 days post anthesis. more...

Organism:: Gossypium arboreum; Gossypium barbadense; Gossypium raimondii; Gossypium hirsutum

Type:: Expression profiling by array

Platform:: GPL8672
4 Samples

Download data: CEL

Series

Accession:: GSE43528

ID:: 200043528

Analyze with GEO2R

Select item 20003849013.

Comparative analysis of transcriptome profiles of G. hirsutum L. cv. MCU5 and its fuzzless-lintless mutant during fiber development stages.

(Submitter supplied) Cotton is one of the most commercially important Fiber crops in the world and used as a source for natural textile Fiber and cottonseed oil. The fuzzless-lintless ovules of cotton mutants are ideal source for identifying genes involved in Fiber development by comparing with Fiber bearing ovules of wild-type. To decipher molecular mechanisms involved in Fiber cell development, transcriptome analysis has been carried out by comparing G. more...

Organism:: Gossypium hirsutum; Gossypium arboreum; Gossypium barbadense; Gossypium raimondii

Type:: Expression profiling by array

Platform:: GPL8672
30 Samples

Download data: CEL, CHP

Series

Accession:: GSE38490

ID:: 200038490

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20004172514.

Understanding the molecular events underpinning cultivar differences in physiological performance and heat tolerance

(Submitter supplied) Plants were acclimated for 4 d at optimal conditions (32/25 oC day/night) in the growth cabinet before initiation of the temperature treatment. For the control (32 oC), cabinet conditions were left unchanged during the treatment period. Due to limited growth cabinet space, plants of a comparative physiological age were transferred to the controlled environment growth cabinet after the control plants had been removed. more...

Organism:: Gossypium barbadense; Gossypium raimondii; Gossypium hirsutum; Gossypium arboreum

Type:: Expression profiling by array

Platform:: GPL8672
12 Samples

Download data: CEL

Series

Accession:: GSE41725

ID:: 200041725

Analyze with GEO2R

Select item 20003687615.

affy_cotton_2011_12 - Comparative transcriptional profiling of cotton fibers in Gossypium hirsutum and Gossypium barbadense using EST pyrosequencing and microarray hybridization

Organism:: Gossypium barbadense; Gossypium raimondii; Gossypium arboreum; Gossypium hirsutum

Type:: Expression profiling by array

Platform:: GPL8672
4 Samples

Download data: CEL

Series

Accession:: GSE36876

ID:: 200036876

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002981016.

Global gene expression analysis of cotton (Gossypium hirsutum L.) under drought stress in leaf tissue and during fibre development stages.

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Gossypium raimondii; Gossypium barbadense; Gossypium hirsutum; Gossypium arboreum

Type:: Expression profiling by array

Platform:: GPL8672
30 Samples

Download data: CEL, CHP

Series

Accession:: GSE29810

ID:: 200029810

Select item 20002956717.

Global gene expression analysis of cotton (Gossypium hirsutum L.) under drought stress during fibre development stages.

(Submitter supplied) Transcriptome analysis in cotton during fibre development stages. To study the molecular response of drought stress in cotton under field condition global gene expression analysis was carried out at fibre development stages (0, 5, 10 and 20 dpa/Days post anthesis). Gossypium hirsutum cv. Bikaneri Nerma was used for the gene expression analysis. Cotton plants were subjected to drought stress at peak flowering stage. more...

Organism:: Gossypium hirsutum; Gossypium arboreum; Gossypium barbadense; Gossypium raimondii

Type:: Expression profiling by array

Platform:: GPL8672
24 Samples

Download data: CEL, CHP

Series

Accession:: GSE29567

ID:: 200029567

Select item 20002956618.

Global gene expression analysis of cotton (Gossypium hirsutum L.) under drought stress in leaf tissue.

(Submitter supplied) Transcriptome analysis in cotton under drought stress. To study the molecular response of drought stress in cotton under field condition global gene expression analysis was carried out in leaf tissue. Gossypium hirsutum cv. Bikaneri Nerma was used for the gene expression analysis. Cotton plants were subjected to drought stress at peak flowering stage. Leaf samples were collected when the soil moisture content was 19.5% which is 50% of the normal control plots. more...

Organism:: Gossypium hirsutum; Gossypium arboreum; Gossypium barbadense; Gossypium raimondii

Type:: Expression profiling by array

Platform:: GPL8672
6 Samples

Download data: CEL, CHP

Series

Accession:: GSE29566

ID:: 200029566

Select item 20003602119.

Expression data from 0dpa ovules of GhHD-1 silenced and over-expression transgenic cotton lines

(Submitter supplied) Cotton (Gossypium hirsutum L.) fibres are specialised trichomes that extend from the seedcoat. To date only a few genes directly involved in the differentiation of these epidermal cells have been identified. We have identified a HD-ZIP transcription factor, GhHD-1, expressed in trichomes and early fibres that might play a role in cotton fibre initiation. Here we characterise GhHD-1 from G. hirsutum and show, using reporter constructs and qRT-PCR, that they are expressed predominantly in epidermal tissues during early fibre development and in other tissues bearing epidermal trichomes. more...