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Items: 18

1.

Transcriptomic analysis of Verbena bonariensis leaves in response to low temperature

(Submitter supplied) The samples were respectively from three replicates of the cold-stress treatment and the control, then we obtained six cDNA libraries. 271,920 unigenes were produced from 406,641 assembled transcripts. Of these, 42,490 significantly differential expression genes (Corrected P-value <0.05) were obtained, including 20,412 up- and 23,078 down-regulated genes.
Organism:
Verbena bonariensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23799
6 Samples
Download data: FASTA, TXT
Series
Accession:
GSE112477
ID:
200112477
2.

Transcriptomic analysis of Verbena bonariensis roots in response to cadmium stress

(Submitter supplied) The samples were respectively from three replicates of the Cd-stress treatment and the control, then we obtained six cDNA libraries. In total, 237,866 transcripts and 191,370 unigenes were constructed. We got a total of 23,424 differentially expressed genes (DEGs), of which 12,558 were up-regulated and the other 10,866 were down regulated under the Cd treatment.
Organism:
Verbena bonariensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23799
6 Samples
Download data: FASTA, TXT
Series
Accession:
GSE113569
ID:
200113569
3.

Identification of cadmium resistance and transcriptome sequence analysis under Cadmium Stress in Verbena bonariensis

(Submitter supplied) Verbena bonariensis is a species with excellent garden plant, good environmental adaptability and great potential for future development.Cadmium has caused serious heavy metal pollution in the soil, which has posed a great threat to plant growth. In this study, Illumina sequencing technology was used to sequence the transcriptome of Verbena bonariensis leaf under normal and Cd stress, respectively. In total, 95,013 transcripts and 63021 genes with an average length of 923 bp and 1,246 bp were constructed from the clean sequence reads, respectively. And 1037 DEGs were found in response to cadmium treatment, of which 10 were selected for qRT-PCR. In conclusion, this study first identified the Verbena bonariensis as a heavy metal tolerant plant and provided the first large-scale transcriptional data set in response to cadmium stress. Our research will help to understand the mechanism of resistance to Cd in the Verbena bonariensis and provide clues for further studies on the relationships between plants and heavy metals in other Verbenaceae plants.
Organism:
Verbena bonariensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23799
2 Samples
Download data: FASTA, XLS
Series
Accession:
GSE101600
ID:
200101600
4.

Illumina HiSeq 4000 (Verbena bonariensis)

Organism:
Verbena bonariensis
3 Series
14 Samples
Download data
Platform
Accession:
GPL23799
ID:
100023799
5.

T_3

Organism:
Verbena bonariensis
Source name:
leaves
Platform:
GPL23799
Series:
GSE112477
Download data
Sample
Accession:
GSM3070933
ID:
303070933
6.

T_2

Organism:
Verbena bonariensis
Source name:
leaves
Platform:
GPL23799
Series:
GSE112477
Download data
Sample
Accession:
GSM3070932
ID:
303070932
7.

T_1

Organism:
Verbena bonariensis
Source name:
leaves
Platform:
GPL23799
Series:
GSE112477
Download data
Sample
Accession:
GSM3070931
ID:
303070931
8.

L_3

Organism:
Verbena bonariensis
Source name:
leaves
Platform:
GPL23799
Series:
GSE112477
Download data
Sample
Accession:
GSM3070930
ID:
303070930
9.

L_2

Organism:
Verbena bonariensis
Source name:
leaves
Platform:
GPL23799
Series:
GSE112477
Download data
Sample
Accession:
GSM3070929
ID:
303070929
10.

L_1

Organism:
Verbena bonariensis
Source name:
leaves
Platform:
GPL23799
Series:
GSE112477
Download data
Sample
Accession:
GSM3070928
ID:
303070928
11.

T023: roots, experimental group (100mg/kg Cd)

Organism:
Verbena bonariensis
Source name:
roots, experimental group (100mg/kg Cd)
Platform:
GPL23799
Series:
GSE113569
Download data
Sample
Accession:
GSM3109211
ID:
303109211
12.

T022: roots, experimental group (100mg/kg Cd)

Organism:
Verbena bonariensis
Source name:
roots, experimental group (100mg/kg Cd)
Platform:
GPL23799
Series:
GSE113569
Download data
Sample
Accession:
GSM3109210
ID:
303109210
13.

T021: roots, experimental group (100mg/kg Cd)

Organism:
Verbena bonariensis
Source name:
roots, experimental group (100mg/kg Cd)
Platform:
GPL23799
Series:
GSE113569
Download data
Sample
Accession:
GSM3109209
ID:
303109209
14.

T013: roots, control group (no Cd solution)

Organism:
Verbena bonariensis
Source name:
roots, control group (no Cd solution)
Platform:
GPL23799
Series:
GSE113569
Download data
Sample
Accession:
GSM3109208
ID:
303109208
15.

T012: roots, control group (no Cd solution)

Organism:
Verbena bonariensis
Source name:
roots, control group (no Cd solution)
Platform:
GPL23799
Series:
GSE113569
Download data
Sample
Accession:
GSM3109207
ID:
303109207
16.

T011: roots, control group (no Cd solution)

Organism:
Verbena bonariensis
Source name:
roots, control group (no Cd solution)
Platform:
GPL23799
Series:
GSE113569
Download data
Sample
Accession:
GSM3109206
ID:
303109206
17.

T02 treated with cadmium

Organism:
Verbena bonariensis
Source name:
leaves
Platform:
GPL23799
Series:
GSE101600
Download data: XLS
Sample
Accession:
GSM2706560
ID:
302706560
18.

T01 untreated

Organism:
Verbena bonariensis
Source name:
leaves
Platform:
GPL23799
Series:
GSE101600
Download data: XLS
Sample
Accession:
GSM2706559
ID:
302706559
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db=gds|term=txid28516[Organism]|query=1|qty=2|blobid=MCID_67253bd0ef89dc43ad7747b3|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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