GEO DataSets

(Submitter supplied) Vibrio spp. are major pathogens responsible for mortality and disease in various marine aquaculture organisms. Effective disease control and genetic breeding strategies rely heavily on understanding host vibriosis resistance mechanisms. The Chinese tongue sole (Cynoglossus semilaevis) is economically vital but suffers from substantial mortalities due to vibriosis. Through continuous selective breeding, we have successfully obtained vibriosis-resistant families of this species. more...

Organism:

Cynoglossus semilaevis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16099

30 Samples

Download data: TXT

(Submitter supplied) In the present study, five important somatotropic and reproductive tissues including brain, pituitary gland, liver, gonad and muscle from 6 large females and 6 small males were used for transcriptomic analysis. A mean of 23,389,128 high quality clean reads were obtained from each library and 109, 698, 1,325, 2,299 and 2,141 differentially expressed genes (DEGs) separately recognized from brain, pituitary gland, liver, gonad and muscle between small and large female individuals (fold change ≥ 2 and q < 0.05). more...

Organism:

Cynoglossus semilaevis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24093

30 Samples

Download data: XLSX

(Submitter supplied) Vibrio harveyi is a major bacterial pathogen that can cause fatal vibriosis in Chinese tongue sole (Cynoglossus semilaevis). To comprehend the molecular mechanisms of C. semilaevis host response against V. harveyi infection, we performed transcriptome (RNA-seq) analysis of C. semilaevis from resistant family and susceptible family.

Organism:

Cynoglossus semilaevis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16099

12 Samples

Download data: TXT

(Submitter supplied) In the present study, four important somatotropic and reproductive tissues including brain, pituitary, liver, and gonad from 15 females and 15 males were used for transcriptome analysis by RNA-seq. A mean of 37,533,991 high quality clean reads were obtained from each library and 806, 1,482, 818, and 14,695 differentially expressed genes in female and male were identified from brain, pituitary, liver, and gonad, respectively (fold change ≥ 2 and q < 0.05). more...

Organism:

Cynoglossus semilaevis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24093

24 Samples

Download data: FA, TXT

(Submitter supplied) Background: Salinity is an important abiotic stress that influences the physiological and metabolic activity, reproduction, growth and development of marine fish. It has been suggested that half-smooth tongue sole (Cynoglossus semilaevis), a euryhaline fish species, use a large amount of energy to maintain osmotic pressure balance when exposed to fluctuations in salinity. To delineate the molecular response of C. more...

Organism:

Cynoglossus semilaevis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24671

6 Samples

Download data: TXT, XLS

(Submitter supplied) Half-smooth tongue sole (Cynoglossus semilaevis) is a commercially valuable flatfish, ranking among the most valuable fishes in the coastal areas of China. It has an asymmetric body shape with lateralization of the eyes to the same side during metamorphosis as same as the other flatfish species. However, little is known about the function and profile of circRNAs in the half-smooth tongue sole. In this study,a total of 2730 circRNAs were identified from in the fish by deep RNA-sequencing technique.

Organism:

Cynoglossus semilaevis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16099

1 Sample

Download data: TXT

(Submitter supplied) Half-smooth tongue sole (Cynoglossus semilaevis) is a commercially valuable flatfish, ranking among the most valuable fishes in the coastal areas of China. It has an asymmetric body shape with lateralization of the eyes to the same side during metamorphosis as same as the other flatfish species. However, little is known about the function and profile of lncRNAs in the half-smooth tongue sole. In this study, we carry out a genome-wide review of lncRNAs in the fish by using large-scale deep sequencing.

Organism:

Cynoglossus semilaevis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16099

1 Sample

Download data: FASTA, TXT

(Submitter supplied) Environmental sex determination (ESD) occurs in divergent, phylogenetically unrelated taxa, and in some species co-occurs with genetic sex determination (GSD) mechanisms. Although epigenetic regulation in response to environmental effects has long been proposed to be associated with ESD, a systemic analysis on epigenetic regulation of ESD is still lacking. Using half-smooth tongue sole (Cynoglossus semilaevis) as a model – a marine fish which has both ZW chromosomal GSD and temperature-dependent ESD – we investigated the role of DNA methylation in transition from GSD to ESD by comparing gonadal DNA methylomes of parental females, parental pseudo-males, F1 females, F1 pseudo-males and normal males.

Organism:

Cynoglossus semilaevis

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL16099

10 Samples

Download data: TXT