GEO DataSets

(Submitter supplied) We provide a manually-curated genome mining analysis of the bacterial plant pathogen Streptomyces scabiei. The expression of the deduced biosynthetic gene clusters was assessed by a RNAseq approach, and their potential to be induced by the virulence elicitors cellobiose and cellotriose was estimated by comparing mRNA levels before and after elicitor addition. Finally, we performed metabolomic analyzes to evaluate how the production of known specialized metabolites responds to virulence elicitors, in correlation (or not) with the transcriptomic data

Organism:

Streptomyces scabiei

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30474

30 Samples

Download data: CSV

(Submitter supplied) 28 Streptomyces strains isolated from common scab lesions of potato tubers from a wide geographic range in Norway, were selected for microarray analysis. The selected strains were subjected to species identification by microarray, 16S phylogenetic analysis and PCR; and microarray-based comparative genome analysis. To our knowledge, this is the first report of S. turgidiscabies and S. europaeiscabiei in Norway.

Organism:

Streptomyces europaeiscabiei; Streptomyces scabiei; Streptomyces turgidiscabies

Type:

Genome variation profiling by array

Platform:

GPL10095

62 Samples

Download data: GPR

(Submitter supplied) Bacteria isolated from potato scab lesions in Finland or northern Sweden were analyzed using microarrays, PCR, and sequencing. Data indicate wide genetic variability in pathogenicity islands among S.turgidiscabies and S.scabies strains.

Organism:

Streptomyces reticuliscabiei; Streptomyces scabiei; Streptomyces turgidiscabies

Type:

Genome variation profiling by array

Platforms:

GPL9474 GPL9473

28 Samples

Download data: GPR

(Submitter supplied) Gene expression in Streptomyces turgidiscabies pathogenicity island was studied after transferring cells into thaxtomin A inducing medium OBB using Agilent 60mer oligonucleotide array with probes designed for S.scabies and S.turgidiscabies. Gene expression study was used to confirm results of gene prediction.

Organism:

Streptomyces scabiei; Streptomyces turgidiscabies

Type:

Expression profiling by array

Platform:

GPL9345

12 Samples

Download data: GPR

(Submitter supplied) Agilent 60mer

Organism:

Streptomyces scabiei; Streptomyces turgidiscabies

1 Series

62 Samples

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(Submitter supplied) 40mer oligos Protocol: See manufacturer's website

Organism:

Streptomyces scabiei; Streptomyces turgidiscabies

1 Series

12 Samples

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(Submitter supplied) Agilent 60mer Array probes (those which are of interest in this study) are from two bacteria genomes: S.turgidiscabies and S.scabies. Protocol: See manufacturer's website

Organism:

Streptomyces scabiei; Streptomyces turgidiscabies

1 Series

1 Sample

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(Submitter supplied) Agilent 60mer Array probes (those which are of interest in this study) are from two bacteria genomes: S.turgidiscabies and S.scabies. Protocol: See manufacturer's website

Organism:

Streptomyces scabiei; Streptomyces turgidiscabies

1 Series

27 Samples

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