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Items: 1 to 20 of 37

1.

Bacterial mRNA sequencing through targeted rRNA depletion for efficient RNA-seq in varied species and co-cultures

(Submitter supplied) mRNA sequencing in bacteria is challenging due to the abundance of ribosomal rRNA that cannot be easily removed prior to sequencing. While commercially available kits target specific rRNA sequences found in defined lists of common bacterial species, they are frequently inefficient when applied to other divergent species, including those from environmental isolates. Similar to the commercial kits, other common techniques for rRNA depletion typically employ large probe sets that tile full-length rRNA sequences; however, such approaches are both time consuming and expensive when applied to multiple species or complex consortia of non-model microbes. more...
Organism:
Caecomyces churrovis; Escherichia coli; Fibrobacter succinogenes; Geobacter metallireducens; Anaeromyces robustus
Type:
Expression profiling by high throughput sequencing
10 related Platforms
65 Samples
Download data: TXT
Series
Accession:
GSE223404
ID:
200223404

PubMed Full text in PMC Similar studies

2.

Substrate-based regulation in gut fungi

(Submitter supplied) Differential expression analysis of overall transcriptome in response to varying carbon source
Organism:
Anaeromyces robustus; Neocallimastix californiae
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL23124 GPL23123
43 Samples
Download data: FA, TXT
Series
Accession:
GSE95479
ID:
200095479

SRA Run Selector

3.

Illumina NextSeq 500 (Anaeromyces robustus; Fibrobacter succinogenes)

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
1 Series
4 Samples
Download data
Platform
Accession:
GPL33047
ID:
100033047

4.

Illumina HiSeq 4000 (Anaeromyces robustus; Fibrobacter succinogenes)

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
1 Series
8 Samples
Download data
Platform
Accession:
GPL33046
ID:
100033046

5.

Illumina NextSeq 500 (Anaeromyces sp. KS-2015)

Organism:
Anaeromyces robustus
1 Series
20 Samples
Download data
Platform
Accession:
GPL23124
ID:
100023124

6.

Fs+Ar EMBR+ Rep2

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
Source name:
strain UWB7, A. robustus
Platform:
GPL33047
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947254
ID:
306947254

SRA Run Selector

7.

Fs+Ar EMBR+ Rep1

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
Source name:
strain UWB7, A. robustus
Platform:
GPL33047
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947253
ID:
306947253

SRA Run Selector

8.

Fs+Ar RNase H Rep3

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
Source name:
strain UWB7, A. robustus
Platform:
GPL33047
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947252
ID:
306947252

SRA Run Selector

9.

Fs+Ar RNase H Rep1

Organism:
Anaeromyces robustus; Fibrobacter succinogenes
Source name:
strain UWB7, A. robustus
Platform:
GPL33047
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947250
ID:
306947250

SRA Run Selector

10.

Fs+Ar total RNA EMBR

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
Source name:
strain UWB7, C. churrovis
Platform:
GPL33046
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947268
ID:
306947268

SRA Run Selector

11.

Fs+Ar RNase H Rep2

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
Source name:
strain UWB7, A. robustus
Platform:
GPL33046
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947251
ID:
306947251

SRA Run Selector

12.

Fs+Ar EMBR Rep3

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
Source name:
strain UWB7, A. robustus
Platform:
GPL33046
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947249
ID:
306947249

SRA Run Selector

13.

Fs+Ar EMBR Rep2

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
Source name:
strain UWB7, A. robustus
Platform:
GPL33046
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947248
ID:
306947248

SRA Run Selector

14.

Fs+Ar EMBR Rep1

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
Source name:
strain UWB7, A. robustus
Platform:
GPL33046
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947247
ID:
306947247

SRA Run Selector

15.

Fs+Ar Control Rep3

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
Source name:
strain UWB7, A. robustus
Platform:
GPL33046
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947246
ID:
306947246

SRA Run Selector

16.

Fs+Ar Control Rep2

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
Source name:
strain UWB7, A. robustus
Platform:
GPL33046
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947245
ID:
306947245

SRA Run Selector

17.

Fs+Ar Control Rep1

Organism:
Fibrobacter succinogenes; Anaeromyces robustus
Source name:
strain UWB7, A. robustus
Platform:
GPL33046
Series:
GSE223404
Download data: TXT
Sample
Accession:
GSM6947244
ID:
306947244

SRA Run Selector

18.

S4 Corn Stover 2

Organism:
Anaeromyces robustus
Source name:
Whole organism
Platform:
GPL23124
Series:
GSE95479
Download data
Sample
Accession:
GSM2514971
ID:
302514971

SRA Run Selector

19.

S4 Corn Stover 1

Organism:
Anaeromyces robustus
Source name:
Whole organism
Platform:
GPL23124
Series:
GSE95479
Download data
Sample
Accession:
GSM2514970
ID:
302514970

SRA Run Selector

20.

S4 Switchgrass 3

Organism:
Anaeromyces robustus
Source name:
Whole organism
Platform:
GPL23124
Series:
GSE95479
Download data
Sample
Accession:
GSM2514969
ID:
302514969

SRA Run Selector

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    Evidence-based nursing, midwifery and healthcare grounded in research and scholarship. Practitioners include nurse practitioners, clinical nurse specialists, nurse anesthetist...<br/>Year introduced: 2010
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