GEO DataSets

(Submitter supplied) mRNA sequencing in bacteria is challenging due to the abundance of ribosomal rRNA that cannot be easily removed prior to sequencing. While commercially available kits target specific rRNA sequences found in defined lists of common bacterial species, they are frequently inefficient when applied to other divergent species, including those from environmental isolates. Similar to the commercial kits, other common techniques for rRNA depletion typically employ large probe sets that tile full-length rRNA sequences; however, such approaches are both time consuming and expensive when applied to multiple species or complex consortia of non-model microbes. more...

Organism:

Caecomyces churrovis; Escherichia coli; Fibrobacter succinogenes; Geobacter metallireducens; Anaeromyces robustus

Type:

Expression profiling by high throughput sequencing

10 related Platforms

65 Samples

Download data: TXT

(Submitter supplied) Differential expression analysis of overall transcriptome in response to varying carbon source

Organism:

Anaeromyces robustus; Neocallimastix californiae

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL23124 GPL23123

43 Samples

Download data: FA, TXT