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Items: 1 to 20 of 72

1.

Method for absolute quantification of microbial communities by using both microarrays and competitive PCR

(Submitter supplied) We investigated an improved method that combines competitive PCR and microarray techniques. This approach allowed us to quantify specific bacterial groups mounted on DNA chips with accuracy close to that of real-time PCR, despite a measurement at the end point of PCR, and also to estimate the bacterial DNA content in sample DNA.
Organism:
Neisseria meningitidis; Porphyromonas gingivalis; Fusobacterium nucleatum; Clostridium beijerinckii; Lactobacillus gasseri; Tannerella forsythia; Bacteria; Acinetobacter baumannii; Escherichia coli; Staphylococcus aureus; Staphylococcus epidermidis; Bacillus cereus; Schaalia odontolytica; Fusobacterium nucleatum subsp. nucleatum; Campylobacter rectus; Helicobacter pylori; Pseudomonas aeruginosa; Aggregatibacter actinomycetemcomitans; Phocaeicola vulgatus; Capnocytophaga gingivalis; Deinococcus radiodurans; Streptococcus mutans; Streptococcus intermedius; Cutibacterium acnes; Treponema denticola; Cereibacter sphaeroides; Streptococcus gordonii; Streptococcus agalactiae; Enterococcus faecalis; Bifidobacterium adolescentis; Homo sapiens; Prevotella intermedia; Prevotella nigrescens
Type:
Other
Platform:
GPL25612
178 Samples
Download data: CSV
Series
Accession:
GSE125085
ID:
200125085

PubMed Similar studies Analyze with GEO2R

2.

Nucleotide-resolution, genome-wide transcriptome maps of Propionibacterium acnes (cultured with and without potassium downshift)

(Submitter supplied) This data contained within this entry was produced as part of a study that included differential RNA-sequencing and microarray analysis. The results of the latter two have also been deposited in GEO
Organism:
Cutibacterium acnes KPA171202
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17154
2 Samples
Download data: TXT
Series
Accession:
GSE46883
ID:
200046883

PubMed Full text in PMC Similar studies SRA Run Selector

3.

Nucleotide-resolution, genome-wide, 5'-end maps of the transcriptome of Propionibacterium acnes (cultured with and without potassium downshift)

(Submitter supplied) The differential RNA-seq data contained within this entry is complemented by global RNA-seq and microarray data, which is also deposited in GEO.
Organism:
Cutibacterium acnes KPA171202
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17147
4 Samples
Download data: TXT
Series
Accession:
GSE46810
ID:
200046810

PubMed Full text in PMC Similar studies SRA Run Selector

4.

Comparative genomics and transcriptomics of Propionibacterium acnes

(Submitter supplied) The anaerobic Gram-positive bacterium Propionibacterium acnes is a human skin commensal, but is occasionally associated with inflammatory diseases. Recent work has indicated that evolutionary distinct lineages of P. acnes play etiologic roles in disease while others are associated with health. To shed light on the molecular basis for differential strain properties, we carried out genomic and transcriptomic analysis of distinct P. more...
Organism:
Cutibacterium acnes KPA171202; Cutibacterium acnes
Type:
Expression profiling by array
Platform:
GPL11580
10 Samples
Download data: TXT
Series
Accession:
GSE26738
ID:
200026738

PubMed Full text in PMC Similar studies Analyze with GEO2R

5.

Illumina Genome Analyzer (Propionibacterium acnes KPA171202)

Organism:
Cutibacterium acnes KPA171202
1 Series
2 Samples
Download data
Platform
Accession:
GPL17154
ID:
100017154

6.

Illumina HiSeq 2000 (Propionibacterium acnes KPA171202)

Organism:
Cutibacterium acnes KPA171202
1 Series
4 Samples
Download data
Platform
Accession:
GPL17147
ID:
100017147

7.

Agilent-029066 Propionibacterium acnes KPA171202

(Submitter supplied) sure print systhesis
Organism:
Cutibacterium acnes KPA171202
1 Series
10 Samples
Download data
Platform
Accession:
GPL11580
ID:
100011580

8.

ATCC MSA-1003_dilution_step10_n=2

Organism:
Cereibacter sphaeroides; Enterococcus faecalis; Bifidobacterium adolescentis; Pseudomonas aeruginosa; Acinetobacter baumannii; Phocaeicola vulgatus; Helicobacter pylori; Neisseria meningitidis; Staphylococcus epidermidis; Deinococcus radiodurans; Streptococcus mutans; Schaalia odontolytica; Cutibacterium acnes; Escherichia coli; Porphyromonas gingivalis; Staphylococcus aureus; Streptococcus agalactiae; Bacillus cereus; Clostridium beijerinckii; Lactobacillus gasseri
Source name:
ATCC MSA-1003_dilution_step10
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562470
ID:
303562470

9.

ATCC MSA-1003_dilution_step10_n=1

Organism:
Phocaeicola vulgatus; Cereibacter sphaeroides; Enterococcus faecalis; Bifidobacterium adolescentis; Escherichia coli; Staphylococcus aureus; Streptococcus agalactiae; Bacillus cereus; Clostridium beijerinckii; Lactobacillus gasseri; Helicobacter pylori; Neisseria meningitidis; Porphyromonas gingivalis; Staphylococcus epidermidis; Deinococcus radiodurans; Streptococcus mutans; Cutibacterium acnes; Pseudomonas aeruginosa; Acinetobacter baumannii; Schaalia odontolytica
Source name:
ATCC MSA-1003_dilution_step10
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562469
ID:
303562469

10.

ATCC MSA-1003_dilution_step9_n=2

Organism:
Phocaeicola vulgatus; Clostridium beijerinckii; Acinetobacter baumannii; Staphylococcus epidermidis; Schaalia odontolytica; Bifidobacterium adolescentis; Helicobacter pylori; Pseudomonas aeruginosa; Neisseria meningitidis; Porphyromonas gingivalis; Deinococcus radiodurans; Streptococcus mutans; Cutibacterium acnes; Escherichia coli; Cereibacter sphaeroides; Staphylococcus aureus; Streptococcus agalactiae; Enterococcus faecalis; Bacillus cereus; Lactobacillus gasseri
Source name:
ATCC MSA-1003_dilution_step9
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562468
ID:
303562468

11.

ATCC MSA-1003_dilution_step9_n=1

Organism:
Phocaeicola vulgatus; Clostridium beijerinckii; Helicobacter pylori; Escherichia coli; Cereibacter sphaeroides; Staphylococcus aureus; Streptococcus mutans; Streptococcus agalactiae; Enterococcus faecalis; Bacillus cereus; Pseudomonas aeruginosa; Porphyromonas gingivalis; Deinococcus radiodurans; Lactobacillus gasseri; Cutibacterium acnes; Acinetobacter baumannii; Neisseria meningitidis; Staphylococcus epidermidis; Schaalia odontolytica; Bifidobacterium adolescentis
Source name:
ATCC MSA-1003_dilution_step9
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562467
ID:
303562467

12.

ATCC MSA-1003_dilution_step8_n=2

Organism:
Escherichia coli; Phocaeicola vulgatus; Staphylococcus aureus; Bacillus cereus; Clostridium beijerinckii; Acinetobacter baumannii; Neisseria meningitidis; Staphylococcus epidermidis; Schaalia odontolytica; Bifidobacterium adolescentis; Pseudomonas aeruginosa; Porphyromonas gingivalis; Streptococcus agalactiae; Lactobacillus gasseri; Helicobacter pylori; Cereibacter sphaeroides; Deinococcus radiodurans; Streptococcus mutans; Enterococcus faecalis; Cutibacterium acnes
Source name:
ATCC MSA-1003_dilution_step8
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562466
ID:
303562466

13.

ATCC MSA-1003_dilution_step8_n=1

Organism:
Acinetobacter baumannii; Escherichia coli; Staphylococcus aureus; Bacillus cereus; Clostridium beijerinckii; Helicobacter pylori; Phocaeicola vulgatus; Cereibacter sphaeroides; Deinococcus radiodurans; Streptococcus mutans; Enterococcus faecalis; Cutibacterium acnes; Pseudomonas aeruginosa; Streptococcus agalactiae; Lactobacillus gasseri; Neisseria meningitidis; Porphyromonas gingivalis; Staphylococcus epidermidis; Schaalia odontolytica; Bifidobacterium adolescentis
Source name:
ATCC MSA-1003_dilution_step8
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562465
ID:
303562465

14.

ATCC MSA-1003_dilution_step7_n=2

Organism:
Acinetobacter baumannii; Escherichia coli; Staphylococcus aureus; Staphylococcus epidermidis; Bacillus cereus; Schaalia odontolytica; Neisseria meningitidis; Porphyromonas gingivalis; Clostridium beijerinckii; Cereibacter sphaeroides; Streptococcus agalactiae; Lactobacillus gasseri; Bifidobacterium adolescentis; Helicobacter pylori; Pseudomonas aeruginosa; Phocaeicola vulgatus; Deinococcus radiodurans; Streptococcus mutans; Enterococcus faecalis; Cutibacterium acnes
Source name:
ATCC MSA-1003_dilution_step7
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562464
ID:
303562464

15.

ATCC MSA-1003_dilution_step7_n=1

Organism:
Helicobacter pylori; Acinetobacter baumannii; Neisseria meningitidis; Escherichia coli; Staphylococcus aureus; Staphylococcus epidermidis; Bacillus cereus; Schaalia odontolytica; Pseudomonas aeruginosa; Phocaeicola vulgatus; Deinococcus radiodurans; Streptococcus mutans; Cutibacterium acnes; Cereibacter sphaeroides; Streptococcus agalactiae; Enterococcus faecalis; Bifidobacterium adolescentis; Porphyromonas gingivalis; Clostridium beijerinckii; Lactobacillus gasseri
Source name:
ATCC MSA-1003_dilution_step7
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562463
ID:
303562463

16.

ATCC MSA-1003_dilution_step6_n=2

Organism:
Helicobacter pylori; Acinetobacter baumannii; Neisseria meningitidis; Staphylococcus epidermidis; Deinococcus radiodurans; Streptococcus mutans; Bacillus cereus; Schaalia odontolytica; Cutibacterium acnes; Escherichia coli; Porphyromonas gingivalis; Staphylococcus aureus; Streptococcus agalactiae; Clostridium beijerinckii; Lactobacillus gasseri; Cereibacter sphaeroides; Enterococcus faecalis; Bifidobacterium adolescentis; Pseudomonas aeruginosa; Phocaeicola vulgatus
Source name:
ATCC MSA-1003_dilution_step6
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562462
ID:
303562462

17.

ATCC MSA-1003_dilution_step6_n=1

Organism:
Helicobacter pylori; Neisseria meningitidis; Porphyromonas gingivalis; Staphylococcus epidermidis; Deinococcus radiodurans; Streptococcus mutans; Schaalia odontolytica; Cutibacterium acnes; Pseudomonas aeruginosa; Acinetobacter baumannii; Phocaeicola vulgatus; Cereibacter sphaeroides; Enterococcus faecalis; Bifidobacterium adolescentis; Escherichia coli; Staphylococcus aureus; Streptococcus agalactiae; Bacillus cereus; Clostridium beijerinckii; Lactobacillus gasseri
Source name:
ATCC MSA-1003_dilution_step6
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562461
ID:
303562461

18.

ATCC MSA-1003_dilution_step5_n=2

Organism:
Helicobacter pylori; Pseudomonas aeruginosa; Neisseria meningitidis; Porphyromonas gingivalis; Deinococcus radiodurans; Streptococcus mutans; Cutibacterium acnes; Escherichia coli; Staphylococcus aureus; Streptococcus agalactiae; Bacillus cereus; Lactobacillus gasseri; Phocaeicola vulgatus; Cereibacter sphaeroides; Enterococcus faecalis; Clostridium beijerinckii; Bifidobacterium adolescentis; Acinetobacter baumannii; Staphylococcus epidermidis; Schaalia odontolytica
Source name:
ATCC MSA-1003_dilution_step5
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562460
ID:
303562460

19.

ATCC MSA-1003_dilution_step5_n=1

Organism:
Pseudomonas aeruginosa; Porphyromonas gingivalis; Deinococcus radiodurans; Streptococcus mutans; Lactobacillus gasseri; Cutibacterium acnes; Acinetobacter baumannii; Neisseria meningitidis; Staphylococcus epidermidis; Schaalia odontolytica; Bifidobacterium adolescentis; Phocaeicola vulgatus; Clostridium beijerinckii; Helicobacter pylori; Escherichia coli; Cereibacter sphaeroides; Staphylococcus aureus; Streptococcus agalactiae; Enterococcus faecalis; Bacillus cereus
Source name:
ATCC MSA-1003_dilution_step5
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562459
ID:
303562459

20.

ATCC MSA-1003_dilution_step4_n=2

Organism:
Pseudomonas aeruginosa; Porphyromonas gingivalis; Lactobacillus gasseri; Cutibacterium acnes; Helicobacter pylori; Cereibacter sphaeroides; Deinococcus radiodurans; Streptococcus mutans; Streptococcus agalactiae; Enterococcus faecalis; Bacillus cereus; Escherichia coli; Phocaeicola vulgatus; Staphylococcus aureus; Clostridium beijerinckii; Acinetobacter baumannii; Neisseria meningitidis; Staphylococcus epidermidis; Schaalia odontolytica; Bifidobacterium adolescentis
Source name:
ATCC MSA-1003_dilution_step4
Platform:
GPL25612
Series:
GSE125085
Download data: CSV
Sample
Accession:
GSM3562458
ID:
303562458

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