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Items: 11

1.

Levels and Characteristics of mRNAs in Dormant Spores of Firmicute Species

(Submitter supplied) Spores of Bacillales and Clostridiales species contain 100s of different mRNAs, and their major function in Bacillus subtilis is to provide ribonucleotides for new RNA synthesis when spores germinate. In new work, RNA was isolated from spores of five Bacillales and one Clostridioides species and relative spore mRNA levels were determined by RNA-seq. Determination of RNA levels in single spores allowed calculation of RNA nt/spore, and assuming mRNA is 3% of spore RNA allowed calculation that only ~6% of spore mRNAs were present at ≥ 1/spore. more...
Organism:
Bacillus subtilis; Bacillus thuringiensis str. Al Hakam; Bacillus atrophaeus ATCC 9372; Geobacillus stearothermophilus ATCC 12980; Clostridioides difficile 630; Priestia megaterium QM B1551
Type:
Expression profiling by high throughput sequencing
6 related Platforms
12 Samples
Download data: TXT
Series
Accession:
GSE173854
ID:
200173854

SRA Run Selector

2.

RNA-Seq gene expression profiling in the plant growth promoting Bacillus atrophaeus UCMB-5137 revealed an alternative strategy of plant colonization compared to Bacillus amyloliquefaciens endophytes

(Submitter supplied) Plant growth promoting rhizobacteria (PGPR) of the genus Bacillus are successfully used as biofertilizers and biopesticides. They potentially can reduce the use of chemicals in agriculture as an ecologically safe alternative, but to optimize the application of PGPR, more profound knowledge on specific gene regulation and molecular mechanisms of interaction with plants is needed. Advance in sequencing technologies made it affordable to compare transcriptom profiles of relative organisms to check to which extend PGPR strains or closely related species differ in their strategies of plant colonization. more...
Organism:
Bacillus atrophaeus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL20146
5 Samples
Download data: TXT
Series
Accession:
GSE68543
ID:
200068543

SRA Run Selector

3.

Illumina NextSeq 500 (Bacillus atrophaeus ATCC 9372)

Organism:
Bacillus atrophaeus ATCC 9372
1 Series
2 Samples
Download data
Platform
Accession:
GPL30078
ID:
100030078

4.

Illumina MiSeq (Bacillus atrophaeus)

Organism:
Bacillus atrophaeus
1 Series
5 Samples
Download data
Platform
Accession:
GPL20146
ID:
100020146

5.

B. atrophaeus ATCC 9372_Spores_b

Organism:
Bacillus atrophaeus ATCC 9372
Source name:
B. atrophaeus ATCC 9372
Platform:
GPL30078
Series:
GSE173854
Download data: TXT
Sample
Accession:
GSM5281861
ID:
305281861

SRA Run Selector

6.

B. atrophaeus ATCC 9372_Spores_a

Organism:
Bacillus atrophaeus ATCC 9372
Source name:
B. atrophaeus ATCC 9372
Platform:
GPL30078
Series:
GSE173854
Download data: TXT
Sample
Accession:
GSM5281860
ID:
305281860

SRA Run Selector

7.

B3_S1

Organism:
Bacillus atrophaeus
Source name:
Bacterial cells
Platform:
GPL20146
Series:
GSE68543
Download data: TXT
Sample
Accession:
GSM1674866
ID:
301674866

SRA Run Selector

8.

B_S4

Organism:
Bacillus atrophaeus
Source name:
Bacterial cells
Platform:
GPL20146
Series:
GSE68543
Download data: TXT
Sample
Accession:
GSM1674865
ID:
301674865

SRA Run Selector

9.

C3_S3

Organism:
Bacillus atrophaeus
Source name:
Bacterial cells
Platform:
GPL20146
Series:
GSE68543
Download data: TXT
Sample
Accession:
GSM1674864
ID:
301674864

SRA Run Selector

10.

C2_S2

Organism:
Bacillus atrophaeus
Source name:
Bacterial cells
Platform:
GPL20146
Series:
GSE68543
Download data: TXT
Sample
Accession:
GSM1674863
ID:
301674863

SRA Run Selector

11.

C_S5

Organism:
Bacillus atrophaeus
Source name:
Bacterial cells
Platform:
GPL20146
Series:
GSE68543
Download data: TXT
Sample
Accession:
GSM1674862
ID:
301674862

SRA Run Selector

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db=gds|term=txid1452[Organism]|query=11|qty=8|blobid=MCID_6730cbe109f698588762c304|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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