txid1404[Organism] - GEO DataSets

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Select item 2002638231.

(Submitter supplied) This study aimed to investigate the survival of an environmental isolate under salt stress and to identify the various genes involved in stress protection following RNA sequencing analysis. The obtained results provide new targets that will allow understanding the in-depth mechanisms involved in the adaptation of bacteria to salt stress.

Organism:: Priestia megaterium

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34380
4 Samples

Download data: TXT

Series

Accession:: GSE263823

ID:: 200263823

Select item 2001434362.

Active DNA demethylation regulates myo-inositol-mediated mutualism between plants and beneficial rhizobacteria

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Arabidopsis thaliana; Priestia megaterium

Type:: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

Platforms:: GPL27984 GPL17639
22 Samples

Download data: BW

Series

Accession:: GSE143436

ID:: 200143436

Select item 2001434343.

Active DNA demethylation regulates myo-inositol-mediated mutualism between plants and beneficial rhizobacteria [bacteria RNA-seq]

(Submitter supplied) Plants develop mutualistic association with beneficial rhizobacteria. To understand this important phenomenon, early mechanisms for establishing the mutualism are critical. Here we report that active DNA demethylation in plants controls root secretion of myo-inositol, which triggers and further facilitates colonization of the beneficial rhizobacteria Bacillus megaterium strain YC4, thereby allowing for plant growth-promotion. more...

Organism:: Priestia megaterium

Type:: Expression profiling by high throughput sequencing

Platform:: GPL27984
6 Samples

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Series

Accession:: GSE143434

ID:: 200143434

SRA Run Selector

Select item 2001738544.

Levels and Characteristics of mRNAs in Dormant Spores of Firmicute Species

(Submitter supplied) Spores of Bacillales and Clostridiales species contain 100s of different mRNAs, and their major function in Bacillus subtilis is to provide ribonucleotides for new RNA synthesis when spores germinate. In new work, RNA was isolated from spores of five Bacillales and one Clostridioides species and relative spore mRNA levels were determined by RNA-seq. Determination of RNA levels in single spores allowed calculation of RNA nt/spore, and assuming mRNA is 3% of spore RNA allowed calculation that only ~6% of spore mRNAs were present at ≥ 1/spore. more...

Organism:: Clostridioides difficile 630; Priestia megaterium QM B1551; Bacillus thuringiensis str. Al Hakam; Bacillus atrophaeus ATCC 9372; Geobacillus stearothermophilus ATCC 12980; Bacillus subtilis

Type:: Expression profiling by high throughput sequencing

6 related Platforms
12 Samples

Download data: TXT

Series

Accession:: GSE173854

ID:: 200173854

SRA Run Selector

Select item 2001107125.

Metabolic rearrangements causing elevated proline and polyhydroxybutyrate accumulation during the osmotic adaptation response of Bacillus megaterium

(Submitter supplied) First transcriptome analyses of Bacillus megaterium DSM319 grown under mild and severe salt stress (up to 1.8 M NaCl) to analyse the addaptation of the organism on transcriptome level

Organism:: Priestia megaterium DSM 319

Type:: Expression profiling by array

Platform:: GPL24595
12 Samples

Download data: CSV, TXT

Series

Accession:: GSE110712

ID:: 200110712

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000375946.

Ketogulonigenium vulgare cells: co-culture mode vs. mono-culture mode

(Submitter supplied) Transcriptional profiling of K. vulgare cells co-cultured with Bacillus megaterium compared to K. vulgare mono-cultured cells. Differentially expressed genes in co-cultured and mono-cultured K. vulgare cells were analyzed. The aim was to investigate the mechanisms of B. megaterium stimulating K. vulgare propagation on global gene expression.

Organism:: Ketogulonicigenium vulgare WSH-001; Priestia megaterium

Type:: Expression profiling by array

Platform:: GPL14693
6 Samples

Download data: TXT

Series

Accession:: GSE37594

ID:: 200037594

Analyze with GEO2R

Select item 2000310837.

Transcriptome profiling of degU expression reveals unexpected regulatory patterns in Bacillus megaterium and discloses new targets for optimizing expression

(Submitter supplied) First whole transcriptome assessment of a Bacillus megaterium strain. The B. megaterium DegU regulon was assessed for LB batch cultures with artificially induced degU expression. DegU is a pleiotropic regulator in B. subtilis governing adaptive responses such as secretory enzyme production.

Organism:: Priestia megaterium; Priestia megaterium DSM 319

Type:: Expression profiling by array

Platform:: GPL13998
8 Samples

Download data: CSV, HTML, TXT

Series

Accession:: GSE31083

ID:: 200031083

Select item 1000343808.

Illumina HiSeq 4000 (Priestia megaterium)

Organism:: Priestia megaterium

1 Series
4 Samples

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Platform

Accession:: GPL34380

ID:: 100034380

Select item 1000300809.

Illumina NextSeq 500 (Bacillus megaterium QM B1551)

Organism:: Priestia megaterium QM B1551

1 Series
2 Samples

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Platform

Accession:: GPL30080

ID:: 100030080

Select item 10002798410.

Illumina HiSeq 2500 (Bacillus megaterium)

Organism:: Priestia megaterium

2 Series
6 Samples

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Platform

Accession:: GPL27984

ID:: 100027984

Select item 10002459511.

Agilent-028409 Bacillus megaterium Bm3_100512 (Probe name version)

(Submitter supplied) Bm Orf based + model proteins (NCBI genome) Arrays of this design have barcodes that begin with 16028409 or 2528409. Protocol: See manufacturer's web site at http://www.agilent.com/

Organism:: Priestia megaterium DSM 319

1 Series
1 Related Platform
12 Samples

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Platform

Accession:: GPL24595

ID:: 100024595

Select item 10001399812.

Agilent-028409 Bacillus megaterium Bm3_100512 (Feature Number version)

(Submitter supplied) Bm Orf based + model proteins (NCBI genome) Arrays of this design have barcodes that begin with 16028409 or 2528409. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. more...