GEO DataSets

(Submitter supplied) Transposable elements (TEs) play a pivotal role in shaping diversity in eukaryotic genomes. The covered smut pathogen on barley, Ustilago hordei, encountered a recent genome expansion. Using long reads, we assembled genomes of 6 U. hordei strains and 3 sister species, to study this genome expansion. We found that larger genome sizes can mainly be attributed to a higher genome fraction of long terminal repeat retrotransposons (LTR-RTs). more...

Organism:

Ustilago hordei

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32374

6 Samples

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(Submitter supplied) The success of plant pathogenic fungi mostly relies on their arsenal of virulence factors that are expressed and delivered into the host tissue during colonization. The biotrophic fungal pathogen Ustilago hordei causes covered smut disease on both barley and oat. The biotrophic interaction of the fungus with its host plant starts with formation of appressorium and subsequent penetration of invasive hyphae into the plant cell, in which the plasma membrane of the infected cell gets invaginated and encases the penetrating hypha. more...

Organism:

Ustilago hordei

Type:

Expression profiling by array

Platform:

GPL25345

18 Samples

Download data: TXT

(Submitter supplied) Ustilago hordei 3' expression array version 1.0 Arrays of this design have barcodes that begin with 16031104 or 2531104. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. more...

Organism:

Ustilago hordei

1 Series

18 Samples

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