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Items: 1 to 20 of 359

1.

Epigenetic changes and an extensive rewiring of the transcriptome underlie worker size distribution in the Florida carpenter ant

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Camponotus floridanus
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL33640 GPL33641 GPL33639
174 Samples
Download data: BEDGRAPH, COV, CSV, SF
Series
Accession:
GSE239979
ID:
200239979
2.

Epigenetic changes and an extensive rewiring of the transcriptome underlie worker size distribution in the Florida carpenter ant [miRNA-seq]

(Submitter supplied) Variation in continuous traits, such as height, is a complex output of genetic and environmental factors. In the Florida carpenter ant, workers are 75% genetically related but exhibit a wide range of lengths that broadly categorizes them into minor or major subcastes with specific roles within the colony. While initial studies have suggested that epigenetic changes can mediate the influence of the environment in the differential development of minor and major ants, no study has comprehensively studied ant size as a continuous phenotype with genome-wide approaches. more...
Organism:
Camponotus floridanus
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL33640
24 Samples
Download data: CSV
Series
Accession:
GSE239978
ID:
200239978
3.

Epigenetic changes and an extensive rewiring of the transcriptome underlie worker size distribution in the Florida carpenter ant [BiSulfite-seq]

(Submitter supplied) Variation in continuous traits, such as height, is a complex output of genetic and environmental factors. In the Florida carpenter ant, workers are 75% genetically related but exhibit a wide range of lengths that broadly categorizes them into minor or major subcastes with specific roles within the colony. While initial studies have suggested that epigenetic changes can mediate the influence of the environment in the differential development of minor and major ants, no study has comprehensively studied ant size as a continuous phenotype with genome-wide approaches. more...
Organism:
Camponotus floridanus
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL33641
54 Samples
Download data: BEDGRAPH, COV
Series
Accession:
GSE239924
ID:
200239924
4.

Epigenetic changes and an extensive rewiring of the transcriptome underlie worker size distribution in the Florida carpenter ant [RNA-seq]

(Submitter supplied) Variation in continuous traits, such as height, is a complex output of genetic and environmental factors. In the Florida carpenter ant, workers are 75% genetically related but exhibit a wide range of lengths that broadly categorizes them into minor or major subcastes with specific roles within the colony. While initial studies have suggested that epigenetic changes can mediate the influence of the environment in the differential development of minor and major ants, no study has comprehensively studied ant size as a continuous phenotype with genome-wide approaches. more...
Organism:
Camponotus floridanus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL33639 GPL33640
48 Samples
Download data: CSV, SF
Series
Accession:
GSE239921
ID:
200239921
5.

Epigenetic changes and an extensive rewiring of the transcriptome underlie worker size distribution in the Florida carpenter ant [EM-seq]

(Submitter supplied) Variation in continuous traits, such as height, is a complex output of genetic and environmental factors. In the Florida carpenter ant, workers are 75% genetically related but exhibit a wide range of lengths that broadly categorizes them into minor or major subcastes with specific roles within the colony. While initial studies have suggested that epigenetic changes can mediate the influence of the environment in the differential development of minor and major ants, no study has comprehensively studied ant size as a continuous phenotype with genome-wide approaches. more...
Organism:
Camponotus floridanus
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL33639
48 Samples
Download data: COV
Series
Accession:
GSE239902
ID:
200239902
6.

RNA-seq from Camponotus and Harpegnathos ants for genome annotation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL22089 GPL20286
47 Samples
Download data
Series
Accession:
GSE102605
ID:
200102605
7.

Whole body RNA-seq from developmental stages of Camponotus ants

(Submitter supplied) RNA from Camponotus embryos, instar 1 larvae, instar 4 larvae, early pupae, late pupae (minor and major), adult workers, and males was sequenced to look for gene expression changes throughout development.
Organism:
Camponotus floridanus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL20286
15 Samples
Download data: RPKM
Series
Accession:
GSE102603
ID:
200102603
8.

Caste-specific gene expression in ants

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Harpegnathos saltator; Camponotus floridanus; Monomorium pharaonis
Type:
Expression profiling by high throughput sequencing
4 related Platforms
152 Samples
Download data
Series
Accession:
GSE83807
ID:
200083807
9.

Whole-body RNA-seq from Camponotus floridanus workers and queen

(Submitter supplied) RNA-seq from whole bodies of workers (major and minor) and queen from C. floridanus to increase replicate number from 2010 genome study
Organism:
Camponotus floridanus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL14137
3 Samples
Download data: TXT
Series
Accession:
GSE83799
ID:
200083799
10.

Epigenetic (re)programming of caste-specific behavior in the ant Camponotus floridanus

(Submitter supplied) Comparison of transcriptome and histone acetylation in Camponotus floridanus minor scout brains following 45 day treatment with small molecule pharmacologicals. The goal of this study was to characterize the molecular changes in gene expression and histone modification caused by ad lib feeding small molecule HAT and HDAC inhibitors
Organism:
Camponotus floridanus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL14137 GPL20286
64 Samples
Download data: TXT, WIG
Series
Accession:
GSE69553
ID:
200069553
11.

A chromatin link to caste identity in the carpenter ant Camponotus floridanus

(Submitter supplied) The goal of this study was to assay the extent of variation in chromatin organization between 3 ant castes (major and minor female workers and males) in one colony of Camponotus floridanus carpenter ant using ChIPseq.
Organism:
Camponotus floridanus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL15483 GPL14137
45 Samples
Download data: GTF, TXT
Series
Accession:
GSE37523
ID:
200037523
12.

Genome-wide analysis of global and caste-specific DNA methylation in two ant species: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing
4 related Platforms
47 Samples
Download data: BEDGRAPH, FA
Series
Accession:
GSE31577
ID:
200031577
13.

Single base resolution methylome of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep BS-Seq of two Ants: Camponotus floridanus and Harpegnathos saltator.
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Methylation profiling by high throughput sequencing
4 related Platforms
39 Samples
Download data: TXT
Series
Accession:
GSE31576
ID:
200031576
14.

Transcriptome sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of mRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL14137 GPL14138
4 Samples
Download data: BEDGRAPH
Series
Accession:
GSE31346
ID:
200031346
15.

smRNA sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of smRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Harpegnathos saltator; Camponotus floridanus
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL14138 GPL14137
4 Samples
Download data: FA
Series
Accession:
GSE31344
ID:
200031344
16.

High-throughput sequencing analyses of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Camponotus floridanus; Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL10645 GPL10644
20 Samples
Download data: BEDGRAPH, FA
Series
Accession:
GSE22680
ID:
200022680
17.

Small RNA sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of small RNA from two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Camponotus floridanus; Harpegnathos saltator
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL10644 GPL10645
10 Samples
Download data: FA
Series
Accession:
GSE22679
ID:
200022679
18.

Transcriptome sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator

(Submitter supplied) Deep sequencing of mRNA from two Ants: Camponotus floridanus and Harpegnathos saltator
Organism:
Camponotus floridanus; Harpegnathos saltator
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL10645 GPL10644
10 Samples
Download data: BEDGRAPH
Series
Accession:
GSE22678
ID:
200022678
19.

HiSeq X Ten (Camponotus floridanus)

Organism:
Camponotus floridanus
2 Series
54 Samples
Download data
Platform
Accession:
GPL33641
ID:
100033641
20.

Illumina HiSeq 4000 (Camponotus floridanus)

Organism:
Camponotus floridanus
3 Series
48 Samples
Download data
Platform
Accession:
GPL33640
ID:
100033640
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