GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Camponotus floridanus

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL33640 GPL33641 GPL33639

174 Samples

Download data: BEDGRAPH, COV, CSV, SF

(Submitter supplied) Variation in continuous traits, such as height, is a complex output of genetic and environmental factors. In the Florida carpenter ant, workers are 75% genetically related but exhibit a wide range of lengths that broadly categorizes them into minor or major subcastes with specific roles within the colony. While initial studies have suggested that epigenetic changes can mediate the influence of the environment in the differential development of minor and major ants, no study has comprehensively studied ant size as a continuous phenotype with genome-wide approaches. more...

Organism:

Camponotus floridanus

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL33640

24 Samples

Download data: CSV

(Submitter supplied) Variation in continuous traits, such as height, is a complex output of genetic and environmental factors. In the Florida carpenter ant, workers are 75% genetically related but exhibit a wide range of lengths that broadly categorizes them into minor or major subcastes with specific roles within the colony. While initial studies have suggested that epigenetic changes can mediate the influence of the environment in the differential development of minor and major ants, no study has comprehensively studied ant size as a continuous phenotype with genome-wide approaches. more...

Organism:

Camponotus floridanus

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL33641

54 Samples

Download data: BEDGRAPH, COV

(Submitter supplied) Variation in continuous traits, such as height, is a complex output of genetic and environmental factors. In the Florida carpenter ant, workers are 75% genetically related but exhibit a wide range of lengths that broadly categorizes them into minor or major subcastes with specific roles within the colony. While initial studies have suggested that epigenetic changes can mediate the influence of the environment in the differential development of minor and major ants, no study has comprehensively studied ant size as a continuous phenotype with genome-wide approaches. more...

Organism:

Camponotus floridanus

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL33639 GPL33640

48 Samples

Download data: CSV, SF

(Submitter supplied) Variation in continuous traits, such as height, is a complex output of genetic and environmental factors. In the Florida carpenter ant, workers are 75% genetically related but exhibit a wide range of lengths that broadly categorizes them into minor or major subcastes with specific roles within the colony. While initial studies have suggested that epigenetic changes can mediate the influence of the environment in the differential development of minor and major ants, no study has comprehensively studied ant size as a continuous phenotype with genome-wide approaches. more...

Organism:

Camponotus floridanus

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL33639

48 Samples

Download data: COV

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Harpegnathos saltator; Camponotus floridanus

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL22089 GPL20286

47 Samples

Download data

(Submitter supplied) RNA from Camponotus embryos, instar 1 larvae, instar 4 larvae, early pupae, late pupae (minor and major), adult workers, and males was sequenced to look for gene expression changes throughout development.

Organism:

Camponotus floridanus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL20286

15 Samples

Download data: RPKM

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Harpegnathos saltator; Monomorium pharaonis; Camponotus floridanus

Type:

Expression profiling by high throughput sequencing

4 related Platforms

152 Samples

Download data

(Submitter supplied) RNA-seq from whole bodies of workers (major and minor) and queen from C. floridanus to increase replicate number from 2010 genome study

Organism:

Camponotus floridanus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL14137

3 Samples

Download data: TXT

(Submitter supplied) Comparison of transcriptome and histone acetylation in Camponotus floridanus minor scout brains following 45 day treatment with small molecule pharmacologicals. The goal of this study was to characterize the molecular changes in gene expression and histone modification caused by ad lib feeding small molecule HAT and HDAC inhibitors

Organism:

Camponotus floridanus

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL14137 GPL20286

64 Samples

Download data: TXT, WIG

(Submitter supplied) The goal of this study was to assay the extent of variation in chromatin organization between 3 ant castes (major and minor female workers and males) in one colony of Camponotus floridanus carpenter ant using ChIPseq.

Organism:

Camponotus floridanus

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL15483 GPL14137

45 Samples

Download data: GTF, TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Harpegnathos saltator; Camponotus floridanus

Type:

Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing

4 related Platforms

47 Samples

Download data: BEDGRAPH, FA

(Submitter supplied) Deep BS-Seq of two Ants: Camponotus floridanus and Harpegnathos saltator.

Organism:

Harpegnathos saltator; Camponotus floridanus

Type:

Methylation profiling by high throughput sequencing

4 related Platforms

39 Samples

Download data: TXT

(Submitter supplied) Deep sequencing of mRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator

Organism:

Harpegnathos saltator; Camponotus floridanus

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL14137 GPL14138

4 Samples

Download data: BEDGRAPH

(Submitter supplied) Deep sequencing of smRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator

Organism:

Harpegnathos saltator; Camponotus floridanus

Type:

Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL14137 GPL14138

4 Samples

Download data: FA

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Camponotus floridanus; Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL10645 GPL10644

20 Samples

Download data: BEDGRAPH, FA

(Submitter supplied) Deep sequencing of small RNA from two Ants: Camponotus floridanus and Harpegnathos saltator

Organism:

Camponotus floridanus; Harpegnathos saltator

Type:

Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL10644 GPL10645

10 Samples

Download data: FA

(Submitter supplied) Deep sequencing of mRNA from two Ants: Camponotus floridanus and Harpegnathos saltator

Organism:

Camponotus floridanus; Harpegnathos saltator

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL10645 GPL10644

10 Samples

Download data: BEDGRAPH