GEO DataSet Links for SRA (Select 28007061) - GEO DataSets

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Items: 2

Select item 3074405801.

ΔproQ, 0 min, biol rep 5 (Sample 108)

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium

Source name:: SL1344

Platform:: GPL17070
Series:: GSE234009 GSE234010

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Accession:: GSM7440580

ID:: 307440580

SRA Run Selector

Select item 2002340092.

Improved RNA stability estimation through Bayesian modeling reveals most bacterial transcripts have sub-minute half-lives [RIF-seq]

(Submitter supplied) RNA decay is a crucial mechanism for regulating gene expression in response to environmental stresses. In bacteria, RNA-binding proteins (RBPs) are known to be involved in post-transcriptional regulation, but their global impact on RNA half-lives has not been extensively studied. To shed light on the role of the major RBPs ProQ and CspC/E in maintaining RNA stability, we performed RNA sequencing of Salmonella enterica over a time course following treatment with the transcription initiation inhibitor rifampicin (RIF-seq) in the presence and absence of these RBPs. more...