GEO DataSet Links for SRA (Select 11220786) - GEO DataSets

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Items: 2

Select item 3046452881.

lpla_frag_r2_s_r_v1

Organism:: Lactiplantibacillus plantarum

Source name:: Liquid culture of Lactobacillus plantarum (ATCC 8014.

Platform:: GPL29328
Series:: GSE153497

Download data: BEDGRAPH

Sample

Accession:: GSM4645288

ID:: 304645288

SRA Run Selector

Select item 2001534972.

RNA degradation analysis reveals ribosome dynamics in complex microbiome samples

(Submitter supplied) The microbiome has revealed itself as a key player in health and disease. To better understand its role, in addition to microbial diversity, it is important to understand species-specific activity and gene expression. While metatranscriptomics investigates mRNA abundance2, it does not inform about faster post-transcriptional regulation3. Although prokaryotic translation is a common target for antibiotics, a direct measurement of microbiome ribosome dynamics remains inaccessible. more...

Organism:: Escherichia coli; Synechocystis sp. PCC 6803; Staphylococcus aureus; Bacillus amyloliquefaciens; Lactiplantibacillus plantarum; Cryptococcus neoformans; Caulobacter vibrioides; Segatella copri; Alistipes finegoldii; Hoylesella timonensis; compost metagenome; Listeria monocytogenes; Saccharomyces cerevisiae; Salmonella enterica; Parabacteroides merdae; Enterococcus faecalis; Bacillus subtilis; Limosilactobacillus reuteri; Limosilactobacillus fermentum; human feces metagenome