Similar studies for GEO DataSets (Select 200175506) - GEO DataSets

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Items: 12

Select item 2001755061.

Gene expression changes in leaves, roots and Laccaria bicolor mycorrhiza of Poplar treated with ozone or stopped watering.

(Submitter supplied) Illumina technology was used to generate mRNA profiles of leaves, roots and Laccaria bicolor mycorrhiza of Poplar treated with ozone or stopped watering. Total RNA was extracted separately from each plant and pooled to 4 biological replicates per condition.TruSeq mRNA Stranded libraries were constructed and and sequenced using Illumina HiSeq 3000 at the Genotoul sequencing facilities (Toulouse, France). more...

Organism:: Populus trichocarpa; Laccaria bicolor

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL30193 GPL30192
60 Samples

Download data: TXT

Series

Accession:: GSE175506

ID:: 200175506

PubMed Similar studies SRA Run Selector

Select item 2000547892.

Transcriptome analyses of the Laccaria bicolor-Populus trichocarpa mycorrhiza development

(Submitter supplied) Illumina GAIIx technology was used to generate mRNA profiles from the ectomycorrhizal fungi Laccaria bicolor colonizing roots of Populus trichocarpa. Samples were taken after two, four and 12 weeks of contact in order to identify mycorrhiza-regulated transcripts. 37bp reads were generated and aligned to the Populus trichocarpa (http://www.phytozome.net/poplar.php) and the Laccaria bicolor (http://genome.jgi-psf.org/Lacbi2/Lacbi2.home.html) reference genomes using CLC Genomics Workbench 6.

Organism:: Laccaria bicolor; Populus trichocarpa

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL18265 GPL18263 GPL17579
7 Samples

Download data: TXT

Series

Accession:: GSE54789

ID:: 200054789

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000568653.

Effect of Laccaria bicolor, MiSSP7 from L.bicolor and Jasmonic acid on the Poplar transcriptome

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Populus tremula x Populus alba; Populus trichocarpa; Populus tremula x Populus tremuloides

Type:: Expression profiling by array; Expression profiling by high throughput sequencing

Platforms:: GPL13485 GPL18583
40 Samples

Download data: PAIR, TXT

Series

Accession:: GSE56865

ID:: 200056865

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000568644.

Effect of Methyl jasmonate of the Poplar root transcriptome

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Populus tremula x alba INRA 717-1B4 roots treated with Methyl jasmonate. Samples were harvested after two weeks either from untreated control roots or from Methyl jasmonate treated roots. Paired-end (2X100bp) reads were generated and aligned to the Populus trichocarpa (http://www.phytozome.net/poplar.php) using CLC Genomics Workbench 6.

Organism:: Populus tremula x Populus alba

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18583
4 Samples

Download data: TXT

Series

Accession:: GSE56864

ID:: 200056864

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000568635.

Effect of MiSSP7 overexpression on the Poplar root transcriptome

(Submitter supplied) The Poplar transcriptome was analyzed in Populus tremulaxPopulus alba clone 717-1B4 control roots and in two poplar lines overexpressing MiSSP7.

Organism:: Populus tremula x Populus alba; Populus trichocarpa

Type:: Expression profiling by array

Platform:: GPL13485
9 Samples

Download data: PAIR, TXT

Series

Accession:: GSE56863

ID:: 200056863

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000534756.

Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots

(Submitter supplied) The Poplar transcriptome was analyzed in mycorrhizal root tips in contact with Laccaria bicolor for 2 weeks. During mycorrhization the roots were treated with either 250µm ACC, 10nM JA or 500µM SA and compared to untreated mycorrhiza or control roots without contact to L. bicolor. In addition the poplar mutants 35S::PttACO1 and 35S::Atetr1 were used

Organism:: Populus tremula x Populus tremuloides; Populus tremula x Populus alba; Populus trichocarpa

Type:: Expression profiling by array

Platform:: GPL13485
27 Samples

Download data: PAIR, TXT

Series

Accession:: GSE53475

ID:: 200053475

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000662377.

Poplar-Laccaria Mycorrhizal Roots

(Submitter supplied) This study characterizes the transcriptomic alterations of P. tremula x P. alba at three weeks after inoculation with the ectomycorrhizal fungus Laccaria bicolor.

Organism:: Populus trichocarpa; Populus tremula x Populus alba

Type:: Expression profiling by array

Platform:: GPL13485
6 Samples

Download data: PAIR

Series

Accession:: GSE66237

ID:: 200066237

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000290508.

The transcriptome of poplar roots incubated with MiSSP7, a secreted effector protein of Laccaria bicolor

(Submitter supplied) To investigate which genes are affected by MiSSP7, a secreted effector protein of Laccaria bicolor, we analyzed the transcriptomes of poplar roots incubated with MiSSP7 protein.

Organism:: Populus trichocarpa; Populus tremula x Populus alba

Type:: Expression profiling by array

Platform:: GPL13485
6 Samples

Download data: PAIR

Series

Accession:: GSE29050

ID:: 200029050

Select item 2000281579.

Mycorrhizal Metabolome: L. bicolor :: P. trichocapra

(Submitter supplied) Mycorrhizae, symbiotic interactions between soil fungi and tree roots, are ubiquitous in terrestrial ecosystems. The fungi contribute phosphorous, nitrogen and mobilized nutrients from organic matter in the soil and in return the fungus receives photosynthetically-derived carbohydrates. This union of plant and fungal metabolisms is the mycorrhizal metabolome. Understanding this symbiotic relationship at a molecular level provides important contributions to the understanding of forest ecosystems and global carbon cycling. more...

Organism:: Populus tremuloides; Laccaria bicolor

Type:: Expression profiling by high throughput sequencing

Platform:: GPL13325
2 Samples

Download data: TXT

Series

Accession:: GSE28157

ID:: 200028157

PubMed Full text in PMC Similar studies

Select item 20007543710.

Transcriptome analyses of the Laccaria bicolor-Populus trichocarpa mycorrhiza

(Submitter supplied) Illumina HiSeq2000 technology was used to generate mRNA profiles from the ectomycorrhizal fungi Laccaria bicolor colonizing roots of Populus trichocarpa. Samples were taken after 3 months of contact in order to identify mycorrhiza-regulated transcripts. 100bp reads were generated and aligned to the Populus trichocarpa (http://www.phytozome.net/poplar.php) reference genome.

Organism:: Laccaria bicolor; Populus trichocarpa

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL17415 GPL21175
2 Samples

Download data: TXT

Series

Accession:: GSE75437

ID:: 200075437

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20000978411.

Laccaria bicolor S238N gene expression in different tissues

(Submitter supplied) The Transcriptome of different tissues and developmental stages of Laccaria bicolor S238N was analyzed. The array probes were designed from gene models taken from the Joint Genome institute Laccaria bicolor genome sequence version1. One aim of this study was to verify the expression of the automatically annotated gene models in various tissues and to use this transcriptional information to confirm, to correct or to reject gene models. more...

Organism:: Laccaria bicolor S238N-H82; Populus tremula x Populus alba; Populus trichocarpa; Laccaria bicolor; Pseudotsuga menziesii

Type:: Expression profiling by array

Platform:: GPL6192
11 Samples

Download data: TXT

Series

Accession:: GSE9784

ID:: 200009784

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20011715812.

Identification of Populus small RNAs responsive to mutualistic interactions with mycorrhizal fungi, Laccaria bicolor and Rhizophagus irregularis

(Submitter supplied) Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree health and growth. A complete molecular understanding of these interactions will have important implications for increasing agricultural or forestry sustainability using plant:microbe-based strategies. These beneficial associations entail extensive morphological changes orchestrated by the genetic reprogramming in both organisms. more...

Organism:: Populus deltoides; Populus trichocarpa

Type:: Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL25333 GPL25334
18 Samples

Download data: FA, TXT

Series

Accession:: GSE117158

ID:: 200117158

PubMed Full text in PMC Similar studies SRA Run Selector

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Similar studies for GEO DataSets (Select 200175506) (12)
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