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Links from GEO DataSets

Items: 12

1.

De novo metatranscriptome assembly and coral gene expression profile of Montipora capitata with growth anomaly

(Submitter supplied) Purpose: There is a dearth of knowledge regarding the molecular pathology of growth anomaly in corals. We investigated the gene expression profile of Montipora capitata metatranscriptomes from healthy and diseased (growth anomaly) coral colonies to elucidate differentially expressed genes. Methods: mRNA profiles of coral tissue (including symbionts) were generated from three different tissue states: healthy, affected and unaffected. more...
Organism:
coral metagenome
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23310
27 Samples
Download data: FASTA, TSV
Series
Accession:
GSE97888
ID:
200097888

PubMed Full text in PMC Similar studies

2.

Montastraea faveolata bleaching study

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Orbicella faveolata
Type:
Expression profiling by array
Platform:
GPL6515
26 Samples
Download data: GPR
Series
Accession:
GSE10680
ID:
200010680

PubMed Similar studies Analyze with GEO2R

3.

Mfaveolata time course bleaching experiment

(Submitter supplied) The declining health of coral reefs worldwide is likely to intensify in response to continued anthropogenic disturbance from coastal development, pollution, and climate change. In response to these stresses, reef-building corals may exhibit bleaching, which marks the breakdown in symbiosis between coral and zooxanthellae. Mass coral bleaching due to elevated water temperature can devastate coral reefs on a large geographic scale. more...
Organism:
Orbicella faveolata
Type:
Expression profiling by array
Platform:
GPL6515
16 Samples
Download data: GPR
Series
Accession:
GSE10632
ID:
200010632

PubMed Similar studies Analyze with GEO2R

4.

Mfaveolata single-time point bleaching experiment

(Submitter supplied) The declining health of coral reefs worldwide is likely to intensify in response to continued anthropogenic disturbance from coastal development, pollution, and climate change. In response to these stresses, reef-building corals may exhibit bleaching, which marks the breakdown in symbiosis between coral and zooxanthellae. Mass coral bleaching due to elevated water temperature can devastate coral reefs on a large geographic scale. more...
Organism:
Orbicella faveolata
Type:
Expression profiling by array
Platform:
GPL6515
10 Samples
Download data: GPR
Series
Accession:
GSE10630
ID:
200010630

PubMed Similar studies Analyze with GEO2R

5.

Microarray analysis identifies candidate genes for key roles in coral development

(Submitter supplied) Background: Anthozoan cnidarians are amongst the simplest animals at the tissue level of organization, but are surprisingly complex and vertebrate-like in terms of gene repertoire. As major components of tropical reef ecosystems, the stony corals are anthozoans of particular ecological significance. To better understand the molecular bases of both cnidarian development in general and coral-specific processes such as skeletogenesis and symbiont acquisition, microarray analysis was carried out through the period of early development – when skeletogenesis is initiated, and symbionts are first acquired. more...
Organism:
Acropora millepora
Type:
Expression profiling by array
Platform:
GPL6774
3 Samples
Download data: TXT
Series
Accession:
GSE11251
ID:
200011251

PubMed Full text in PMC Similar studies Analyze with GEO2R

6.

Evolutionary insights into scleractinian corals using comparative genomic hybridizations

(Submitter supplied) Background Coral reefs belong to the most ecologically and economically important ecosystems on our planet. Yet, they are under steady decline worldwide due to rising sea surface temperatures, disease, and pollution. Understanding the molecular impact of these stressors on different coral species is imperative in order to predict how coral populations will respond to this continued disturbance. The use of molecular tools such as microarrays has provided deep insight into the molecular stress response of corals. more...
Organism:
Acropora cervicornis; Acropora palmata; Orbicella faveolata; Siderastrea radians
Type:
Genome variation profiling by array
Platforms:
GPL15444 GPL15442 GPL15443
12 Samples
Download data: MEV
Series
Accession:
GSE37279
ID:
200037279

PubMed Full text in PMC Similar studies Analyze with GEO2R

7.

Differential sensitivity of coral larvae to natural levels of ultraviolet radiation (UVR) during the onset of larval competence

(Submitter supplied) Scleractinian corals are the major builders of the complex structural framework of coral reefs. They live in tropical waters around the globe where they are frequently exposed to potentially harmful ultraviolet radiation (UVR). Coral eggs and early embryonic stages are thought to be the most sensitive life stages of corals to UVR given that they are highly buoyant and remain near the sea surface for prolonged periods of time. more...
Organism:
Orbicella faveolata
Type:
Expression profiling by array
Platform:
GPL11119
30 Samples
Download data
Series
Accession:
GSE24949
ID:
200024949

PubMed Similar studies Analyze with GEO2R

8.

Symbiodinium clade content drives host transcriptome more than thermal stress in the coral Montastraea faveolata

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Orbicella faveolata
Type:
Expression profiling by array
Platform:
GPL7317
33 Samples
Download data: MEV
Series
Accession:
GSE15262
ID:
200015262

PubMed Similar studies Analyze with GEO2R

9.

Symbiodinium clade content drives host transcriptome more than thermal stress in the coral Montastraea faveolata part 2

(Submitter supplied) A mutualistic relationship between reef-building corals and endosymbiotic algae (Symbiodinium spp.) forms the basis for the existence of coral reefs. Genotyping tools for Symbiodinium spp. have added a new level of complexity to studies concerning cnidarian growth, nutrient acquisition, and stress. For example, the response of the coral holobiont to thermal stress is connected to the host-Symbiodinium genotypic combination, as different partnerships can have different bleaching susceptibilities. more...
Organism:
Orbicella faveolata
Type:
Expression profiling by array
Platform:
GPL7317
15 Samples
Download data: MEV, TXT
Series
Accession:
GSE15253
ID:
200015253

PubMed Similar studies Analyze with GEO2R

10.

Symbiodinium clade content drives host transcriptome more than thermal stress in the coral Montastraea faveolata (part 1)

(Submitter supplied) Given the overwhelming evidence that symbiont genotypes differentially affect host processes such as growth, bleaching susceptibility, and nutrient acquisition, we set out to measure gene expression differences in fragments of Montastraea faveolata harboring two different clades of Symbiodinium. On the reefs near Puerto Morelos, México, colonies of M. faveolata are known to shift algal symbiont clade with depth, often associating with clade A at the top, clade B in the middle, and clade C near the bottom of the colony. more...
Organism:
Orbicella faveolata
Type:
Expression profiling by array
Platform:
GPL7317
18 Samples
Download data: MEV
Series
Accession:
GSE12809
ID:
200012809

PubMed Similar studies Analyze with GEO2R

11.

Immune response of the Caribbean sea fan, Gorgonia ventalina exposed to an Aplanochytrium parasite as revealed by transcriptome sequencing

(Submitter supplied) Background. Coral reef communities are undergoing marked declines due to a variety of stressors including climate change, eutrophication, sedimentation, and disease. The sea fan coral, Gorgonia ventalina, is a tractable study system to investigate the hypothesis that stressors compromise immunity and lead to onset of disease. Functional studies in Gorgonia ventalina immunity indicate that several key pathways and cellular responses are involved in response to natural microbial invaders, although to date the functional and regulatory pathways remain largely un-neffectors, the primary line of defense in invertebrates. more...
Organism:
Gorgonia ventalina
Type:
Expression profiling by high throughput sequencing
Platform:
GPL15947
2 Samples
Download data: TXT
Series
Accession:
GSE40169
ID:
200040169

PubMed Full text in PMC Similar studies SRA Run Selector

12.

Identifying Genes Associated with the Molecular Scleractinian Coral Calcification Process (Stylophora pistillata study case)

(Submitter supplied) Increasing seawater’s calcium concentration has shown to increase reef building (scleractinian) coral’s calcification rates. In this way the expression of the genes that are associated with the calcification process also altered and, thus can be identified. Needless to say that the overall gene repertoire that participate in the coral calcification process and its molecular mechanisms have not yet been revealed, although sporadic genes that are related to the process have been discovered and investigated. more...
Organism:
Stylophora pistillata
Type:
Expression profiling by array
Platform:
GPL17270
8 Samples
Download data: TXT
Series
Accession:
GSE87159
ID:
200087159

PubMed Full text in PMC Similar studies Analyze with GEO2R

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