Similar studies for GEO DataSets (Select 200089290) - GEO DataSets

Select item 2000892901.

Transcriptome profiling and digital gene expression analysis of sweet potato challenged with Fusarium oxysporum f. sp.batatas.

(Submitter supplied) we performed de novo transcriptome assembly and digital gene expression (DGE) profiling analyses of sweet potato challenged with Fob using Illumina Hiseq technology. A total of 89,944,188 clean reads were generated and were assembled into 101,988 unigenes with an average length of 666bp, 62,605(61.38%) of them were functional annotated in the non-redundant(nr) protein database from NCBI by using BLASTX with a cut-off E-value of 10-5, and COG,GO and KEGG annotations were examined for better understand their functions. more...

Organism:: Ipomoea batatas

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22614
16 Samples

Download data: FASTA, TXT

Series

Accession:: GSE89290

ID:: 200089290

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Select item 2000359292.

Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.]

(Submitter supplied) More than 3.5 million raw DGE tags were obtained in each library. The clean tags in each sample ranged from 3.35 to 3.63 million, and the distinct clean tags ranged from 93,593 to 139,389. The 21 bp DGE clean tags were mapped to sweet potato transcripts. Then, we compared 7 libraries pair-wisely so that 21 pairs of comparisons were implemented. Among these comparisons, we found that 4,721 to 12,151 transcripts had significant changes in expression, and the average number was 9,657. more...

Organism:: Ipomoea batatas

Type:: Expression profiling by high throughput sequencing

Platform:: GPL15253
7 Samples

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Series

Accession:: GSE35929

ID:: 200035929

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Select item 2001716883.

Transcriptome changes specifically associated with apple (Malus domestica) root defense response during Fusarium proliferatum MR5 infection

(Submitter supplied) Purpose: The aim of this study was to identify the specific transcriptomic changes in apple root tissue in response to infection by F. Proliferatum.The characterized transcriptome changes during apple root defense responses to F. Proliferatum inoculation should facilitate the identification of the key molecular components, which may differentiate the resistance and susceptibility among apple rootstock germplasm.

Organism:: Malus domestica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29987
12 Samples

Download data: TXT

Series

Accession:: GSE171688

ID:: 200171688

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Select item 2000863774.

Transcriptional profiling of wilt-resistant and wilt-susceptible chickpea cultivars after Fusarium oxysporum f.sp. ciceri (Foc) inoculation

(Submitter supplied) Purpose: Molecular analysis of chickpea-Foc interaction; Methods: Four LongSAGE libraries of wilt-resistant and wilt-susceptible chickpea cultivars prepared after Foc inoculation and sequenced using Ion Torrent PGM. Results: Transcriptome analyses revealed expression of several plant defense and pathogen virulence genes with their peculier expression patterns in wilt-resistant and wilt-susceptible chickpea cultivars. more...

Organism:: Cicer arietinum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22390
4 Samples

Download data: TXT

Series

Accession:: GSE86377

ID:: 200086377

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Select item 2001199765.

Transcriptomic de novo analysis of pitaya (Hylocereus polyrhizus) canker disease caused by Neoscytalidium dimidiatum

(Submitter supplied) Canker disease caused by Neoscytalidium dimidiatum is the most serious disease that attacks the pitaya industry. One pathogenic fungus, referred to as ND8, was isolated from the wild-type red-fleshed pitaya (Hylocereus polyrhizus) of Hainan Province. Here, we studied mainly the host responses of red-fleshed pitaya (H. polyrhizus) cultivars against N. dimidiatum using Illumina RNA-Seq technology.

Organism:: Selenicereus monacanthus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL25578
4 Samples

Download data: FA, XLS

Series

Accession:: GSE119976

ID:: 200119976

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Select item 2000756456.

Next generation sequencing of Coccinella septempunctata L. with non-diapause, diapause, and diapause-terminated states

(Submitter supplied) The most common ladybird beetle, Coccinella septempunctata L., is an excellent predator of crop pests such as aphids and white flies, and it shows a wide range of adaptability, a large appetite and a high reproductive ability. In this study, we collected female adults in three different states, i.e., non-diapause, diapause and diapause termination, for transcriptome sequencing.

Organism:: Coccinella septempunctata

Type:: Expression profiling by high throughput sequencing

Platform:: GPL21201
3 Samples

Download data: FA, TXT

Series

Accession:: GSE75645

ID:: 200075645

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Select item 2001712197.

Transcriptome analysis reveals the response mechanism of Frl-mediated resistance to Fusarium oxysporum f. sp. radicis-lycopersici (FORL) infection in tomato

(Submitter supplied) Transcriptome analysis reveals the response mechanism of Frl-mediated resistance to Fusarium oxysporum f. sp. radicis-lycopersici (FORL) infection in tomato

Organism:: Solanum lycopersicum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26877
18 Samples

Download data: XLSX

Series

Accession:: GSE171219

ID:: 200171219

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Select item 2000405818.

Genome Sequencing and Comparative Transcriptomics of Race1 and Race4 of Banana pathogen: Fusarium oxysporum f.sp. Cubense

(Submitter supplied) Deep sequencing of mRNA from Fusarium oxysporum f. sp. Cubense 1 and 4 after infecting Musa acuminata 0h and 48h.

Organism:: Fusarium oxysporum f. sp. cubense

Type:: Expression profiling by high throughput sequencing

Platform:: GPL16015
4 Samples

Download data: WIG

Series

Accession:: GSE40581

ID:: 200040581

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Select item 2000481569.

Global transcriptome analysis of orange wheat blossom midge, Sitodiplosis mosellana (Gehin) (Diptera: Cecidomyiidae) to identify candidate transcripts regulating diapause

(Submitter supplied) Many insects enter a developmental arrest (diapause) that allows them to survive harsh seasonal conditions. Despite the well-established ecological significance of diapause, the molecular basis of this crucial adaptation remains largely unresolved. Sitodiplosis mosellana (Gehin), the orange wheat blossom midge (OWBM), causes serious damage to wheat throughout the northern hemisphere, and sporadic outbreaks occur in the world. more...

Organism:: Sitodiplosis mosellana

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17322
2 Samples

Download data: FA, TXT

Series

Accession:: GSE48156

ID:: 200048156

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