GEO DataSets

(Submitter supplied) Whole genome sequencing, particularly in fungi, has progressed at a tremendous rate. More difficult, however, is experimental testing of the inferences about gene function that can be drawn from comparative sequence analysis alone. We present a genome-wide functional characterization of a sequenced but experimentally understudied budding yeast, Saccharomyces bayanus var uvarum (henceforth referred to as S. more...

Organism:

Saccharomyces cerevisiae; Saccharomyces bayanus

Type:

Expression profiling by array; Genome variation profiling by array

8 related Platforms

360 Samples

Download data: GPR

(Submitter supplied) A fundamental problem in biology is the molecular basis for divergence among related organisms. We have investigated the level of divergence of transcription factor binding sites for two key factors that regulate developmental processes in the budding yeasts. The genomic binding locations for the Ste12 and Tec1 transcription factors in S. cerevisiae, S. mikatae and S. bayanus were mapped by chromatin immunoprecipitation combined with microarrays (chIP chip)1, 2 and compared to one another. more...

Organism:

Candida albicans; Saccharomyces mikatae; Saccharomyces cerevisiae; Saccharomyces bayanus

Type:

Genome binding/occupancy profiling by genome tiling array

4 related Platforms

27 Samples

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(Submitter supplied) Transcriptome response of the yeasts C. glabrata and S. cerevisiae treated by an antifungal agent, benomyl Keywords: time course; stress response

Organism:

Nakaseomyces glabratus; Saccharomyces cerevisiae

Type:

Expression profiling by array

Platforms:

GPL6384 GPL6388

12 Samples

Download data: TXT

(Submitter supplied) Genome-scale datasets have been used extensively in model organisms to screen for specific candidates or to predict functions for uncharacterized genes. However, despite the availability of extensive knowledge in model organisms, the planning of genome-scale experiments in poorly studied species is still based on the intuition of experts or heuristic trials. We propose that computational and systematic approaches can be applied to drive the experiment planning process in poorly studied species based on available data and knowledge in closely related model organisms. more...

Organism:

Saccharomyces cerevisiae; Saccharomyces bayanus

Type:

Expression profiling by array

7 related Platforms

343 Samples

Download data: GPR

(Submitter supplied) We describe the genome-wide nucleosome profiles for S. bayanus under standard conditions

Organism:

Saccharomyces bayanus

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL10782

1 Sample

Download data: WIG

(Submitter supplied) Aims: We performed an analysis of maltotriose utilization by 52 Saccharomyces yeast strains able to ferment maltose efficiently and correlated the observed phenotypes with differences in the copy number of genes possibly involved in maltotriose utilization by yeast cells. Methods and Results: The analysis of maltose and maltotriose utilization by laboratory and industrial strains of the species Saccharomyces cerevisiae and Saccharomyces pastorianus (a natural S. more...

Organism:

Saccharomyces cerevisiae

Type:

Genome variation profiling by array

Platforms:

GPL2634 GPL55 GPL10715

13 Samples

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(Submitter supplied) Transcriptional profiling of the yeast Lachancea kluyveri when grown on minimal media with different compounds added as the sole nitrogen source. Cells grown on uracil, uridine, dihydrouracil and ammonia were profiled using cells grown on proline as the reference.

Organism:

Lachancea kluyveri

Type:

Expression profiling by array

Platform:

GPL17318

16 Samples

Download data: GPR