GEO DataSets

(Submitter supplied) More than 3.5 million raw DGE tags were obtained in each library. The clean tags in each sample ranged from 3.35 to 3.63 million, and the distinct clean tags ranged from 93,593 to 139,389. The 21 bp DGE clean tags were mapped to sweet potato transcripts. Then, we compared 7 libraries pair-wisely so that 21 pairs of comparisons were implemented. Among these comparisons, we found that 4,721 to 12,151 transcripts had significant changes in expression, and the average number was 9,657. more...

Organism:

Ipomoea batatas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL15253

7 Samples

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(Submitter supplied) we performed de novo transcriptome assembly and digital gene expression (DGE) profiling analyses of sweet potato challenged with Fob using Illumina Hiseq technology. A total of 89,944,188 clean reads were generated and were assembled into 101,988 unigenes with an average length of 666bp, 62,605(61.38%) of them were functional annotated in the non-redundant(nr) protein database from NCBI by using BLASTX with a cut-off E-value of 10-5, and COG,GO and KEGG annotations were examined for better understand their functions. more...

Organism:

Ipomoea batatas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22614

16 Samples

Download data: FASTA, TXT

(Submitter supplied) In this study, we compared the root transcriptomes between high and low starch content species in three different growth and development periods.This provided a new perspective and resources for the molecular mechanisms study of storage root formation and development process.

Organism:

Ipomoea batatas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23698

18 Samples

Download data: FASTA, TXT

(Submitter supplied) Investigation of whole transcriptome gene expression level during tuberous root formation and development in sweetpotato (Ipomoea batatas) cv. Guangshu 87 Identification of transcription factors (TFs) during tuberous root formation and development in sweetpotato (Ipomoea batatas) cv. Guangshu 87

Organism:

Ipomoea batatas

Type:

Expression profiling by array

Platform:

GPL17440

14 Samples

Download data: PAIR

(Submitter supplied) Many insects enter a developmental arrest (diapause) that allows them to survive harsh seasonal conditions. Despite the well-established ecological significance of diapause, the molecular basis of this crucial adaptation remains largely unresolved. Sitodiplosis mosellana (Gehin), the orange wheat blossom midge (OWBM), causes serious damage to wheat throughout the northern hemisphere, and sporadic outbreaks occur in the world. more...

Organism:

Sitodiplosis mosellana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17322

2 Samples

Download data: FA, TXT

(Submitter supplied) The goal of this study was to lay the groundwork for comparative transcriptomics of sex differences in the brain of wolf spiders, a non-model organism of the pyhlum Euarthropoda, by generating transcriptomes and analyzing gene expression. To examine differences in sex-differential gene expression, short read transcript sequencing and de novo transcriptome assembly were performed. Messenger RNA (mRNA) was isolated from dissected brain tissue of male and female subadult and mature wolf spiders (Schizocosa ocreata). more...

Organism:

Schizocosa ocreata

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29840

10 Samples

Download data: PDF, TXT, XLSX

(Submitter supplied) Background: Variation in locomotor capacity among animals often reflects adaptations to different environments. Despite evidence that physical performance is heritable, the molecular basis of locomotor performance and performance trade-offs remains poorly understood. In this study we identify the genes, signaling pathways, and regulatory processes responsible for the trade-off between burst performance and endurance observed in Xenopus allofraseri, using a transcriptomic approach. more...

Organism:

Xenopus allofraseri

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29147

8 Samples

Download data: TXT