Similar studies for GEO DataSets (Select 200021580) - GEO DataSets

Select item 2000215801.

DeepCAGE and DeepSAGE with proliferating and differentiated C2C12 mouse myoblasts

(Submitter supplied) We use tag-based next generation sequencing analysis to quantify gene expression levels during myogenic differentiation and focused on the identifcation of novel 3' ends with DeepSAGE and novel 5' ends with DeepCAGE.

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL9250
14 Samples

Download data: WIG

Series

Accession:: GSE21580

ID:: 200021580

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000281482.

Unamplified Cap Analysis of Gene Expression on a single molecule sequencer (HeliScopeCAGE)

(Submitter supplied) We report the development of a simplified Cap Analysis of Gene Expression (CAGE) protocol adapted for single molecule sequencers which avoids second strand synthesis, ligation, digestion and PCR. HeliScopeCAGE directly sequences the 3’ end of cap trapped first strand cDNAs. As with previous versions of CAGE, we better define transcription start sites (TSS) than known models, identify novel regions of transcription and alternative promoters, and find two major classes of TSS signal, sharp peaks and broad regions. more...

Organism:: Homo sapiens

Type:: Expression profiling by array; Expression profiling by high throughput sequencing

Platforms:: GPL6884 GPL14761
19 Samples

Download data: TXT

Series

Accession:: GSE28148

ID:: 200028148

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 2000737043.

Novel RNA-binding activity of MYF5 enhances Ccnd1/Cyclin D1 mRNA translation during myogenesis

(Submitter supplied) Skeletal muscle contains long multinucleated and contractile structures known as muscle fibers, which arise from the fusion of myoblasts into nucleated myotubes during myogenesis. The myogenic regulatory factor (MRF) MYF5 is the earliest to be expressed during myogenesis and functions as a transcription factor in muscle progenitor cells (satellite cells) and myocytes. In mouse C2C12 myocytes, MYF5 is implicated in the initial steps of myoblast differentiation into myotubes. more...

Organism:: Mus musculus

Type:: Expression profiling by array

Platform:: GPL6885
16 Samples

Download data: TXT

Series

Accession:: GSE73704

ID:: 200073704

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000170394.

Expression Profiling of Early Myogenesis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Mus musculus

Type:: Expression profiling by array

Platforms:: GPL1261 GPL6105
84 Samples

Download data: CEL

Series

Accession:: GSE17039

ID:: 200017039

Select item 2000170385.

Expression Profiling of Early Myogenesis - Illumina Dataset

(Submitter supplied) Myogenesis is a tightly controlled process involving the transcriptional activation and repression of thousands of genes. Although many components of the transcriptional network are known for the later phases of myogenesis, relatively little work has described the transcriptional landscape within the first 24 hours, when myoblasts commit to differentiate. Through dense temporal sampling of differentiating C2C12 myoblasts, we identify 266 transcriptional regulators (TRs) whose expression is altered within the first 12 hours of myogenesis. more...

Organism:: Mus musculus

Type:: Expression profiling by array

Platform:: GPL6105
36 Samples

Download data: TXT

Series

Accession:: GSE17038

ID:: 200017038

Select item 2000169926.

Expression Profiling of Early Myogenesis - Affymetrix Dataset

(Submitter supplied) Analysis of Early Myogenesis Reveals an Extensive Set of Transcriptional Regulators Whose Knock-down Can Inhibit Differentiation Myogenesis is a tightly controlled process involving the transcriptional activation and repression of thousands of genes. Although many components of the transcriptional network are known for the later phases of myogenesis, relatively little work has described the transcriptional landscape within the first 24 hours, when myoblasts commit to differentiate. more...

Organism:: Mus musculus

Type:: Expression profiling by array

Platform:: GPL1261
48 Samples

Download data: CEL

Series

Accession:: GSE16992

ID:: 200016992

Select item 2000130727.

Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays

(Submitter supplied) Background:Alternative splicing and isoform level expression profiling is an emerging field of interest within genomics. Splicing sensitive microarrays, with probes targeted to individual exons or exon-junctions, are becoming increasingly popular as a tool capable of both expression profiling and finer scale isoform detection. Despite their intuitive appeal, relatively little is known about the performance of such tools, particularly in comparison with more traditional 3’ targeted microarrays. more...

Organism:: Homo sapiens

Type:: Expression profiling by array

Platforms:: GPL5175 GPL5188
40 Samples

Download data: CEL

Series

Accession:: GSE13072

ID:: 200013072

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000130698.

Gene Expression and Isoform Variation: Exon-level Analysis

(Submitter supplied) Background:Alternative splicing and isoform level expression profiling is an emerging field of interest within genomics. Splicing sensitive microarrays, with probes targeted to individual exons or exon-junctions, are becoming increasingly popular as a tool capable of both expression profiling and finer scale isoform detection. Despite their intuitive appeal, relatively little is known about the performance of such tools, particularly in comparison with more traditional 3’ targeted microarrays. more...

Organism:: Homo sapiens

Type:: Expression profiling by array

Platform:: GPL5188
20 Samples

Download data: CEL

Series

Accession:: GSE13069

ID:: 200013069

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000130669.

Gene Expression and Isoform Variation: Gene-level Analysis

(Submitter supplied) Background:Alternative splicing and isoform level expression profiling is an emerging field of interest within genomics. Splicing sensitive microarrays, with probes targeted to individual exons or exon-junctions, are becoming increasingly popular as a tool capable of both expression profiling and finer scale isoform detection. Despite their intuitive appeal, relatively little is known about the performance of such tools, particularly in comparison with more traditional 3’ targeted microarrays. more...

Organism:: Homo sapiens

Type:: Expression profiling by array

Platform:: GPL5175
20 Samples

Download data: CEL

Series

Accession:: GSE13066

ID:: 200013066

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20010149910.

lncRNA expression in C2C12 myoblasts and myotubes

(Submitter supplied) To determine the lncRNA expression profile in C2C12 myoblasts and myotubes, we used mouse lncRNA microarray from Arraystar to examine the expression of lncRNAs in C2C12 myoblasts and myotubes.

Organism:: Mus musculus

Type:: Non-coding RNA profiling by array

Platform:: GPL19286
6 Samples

Download data: TXT

Series

Accession:: GSE101499

ID:: 200101499

Select item 20000099011.

Myogenic differentiation_Cchip

(Submitter supplied) In this study, Affymetrix MG_U74Av2 and MG_U74Cv2 GeneChips were used to analyze gene expression over a 12 day time course in C2C12 myoblasts induced to differentiate in vitro. Triplicate cultures were studied during cell proliferation (days -2 and -1), at cell cycle withdrawal (day 0) and during myogenic fusion and maturation of multinucleated myotubes (days 2, 4, 6, 8, 10). The manuscript associated to this work is Tomczak et al., FASEB J., 2003 Dec 19. more...

Organism:: Mus musculus

Type:: Expression profiling by array

Dataset:: GDS587
Platform:: GPL83
21 Samples

Download data: CEL, EXP, RPT

Series

Accession:: GSE990

ID:: 200000990

Select item 20000098912.

Myogenic differentiation_Achip

(Submitter supplied) In this study, Affymetrix MG_U74Av2 and MG_U74Cv2 GeneChips were used to analyze gene expression over a 12 day time course in C2C12 myoblasts induced to differentiate in vitro. Triplicate cultures were studied during cell proliferation (days -2 and -1), at cell cycle withdrawal (day 0) and during myogenic fusion and maturation of multinucleated myotubes (days 2, 4, 6, 8, 10). The manuscript associated to this work is Tomczak et al., FASEB J., 2003 Dec 19. more...

Organism:: Mus musculus

Type:: Expression profiling by array

Dataset:: GDS586
Platform:: GPL81
24 Samples

Download data: CEL, EXP, RPT

Series

Accession:: GSE989

ID:: 200000989

Select item 58713.

Myogenic differentiation timecourse (MG-U74C)

Analysis of early stages of myogenesis. C2C12 myoblasts induced to differentiate and examined during cell proliferation (days -2 to -1), at cell cycle withdrawal (day 0) and during myogenic fusion and maturation of multinucleated myotubes (days 2 to 10).

Organism:: Mus musculus

Type:: Expression profiling by array, count, 7 time sets

Platform:: GPL83
Series:: GSE990
21 Samples

Download data: CEL, EXP, RPT

DataSet

Accession:: GDS587

ID:: 587

Select item 58614.

Myogenic differentiation timecourse (MG-U74A)

Analysis of early stages of myogenesis. C2C12 myoblasts induced to differentiate and examined during cell proliferation (days -2 to -1), at cell cycle withdrawal (day 0) and during myogenic fusion and maturation of multinucleated myotubes (days 2 to 10).

Organism:: Mus musculus

Type:: Expression profiling by array, count, 8 time sets

Platform:: GPL81
Series:: GSE989
24 Samples

Download data: CEL, EXP, RPT

DataSet

Accession:: GDS586

ID:: 586

Select item 20000049715.

Extraocular muscle, expression changes in critical period (Porter lab)

(Submitter supplied) Evaluation of extraocular muscle (EOM) critical period by expression profiling in dark reared rat. Data form part of publication: Investigative Ophthalmology and Visual Sciences 44: 3842-3855, 2003. Keywords: other

Organism:: Rattus norvegicus

Type:: Expression profiling by SAGE

Platform:: GPL23
2 Samples

Download data

Series

Accession:: GSE497

ID:: 200000497

PubMed Similar studies

Select item 20001283216.

SAGE tags generated from Triticum aestivum cultivars Scorpion 25 and Xi19 grown under normal and hot/dry conditions

(Submitter supplied) Triticum aestivum cultivars Scorpion 25 and Xi 19 were grown under both normal and hot/dry conditions. We compared the effect of these two growth conditions on these two closely related varieties.

Organism:: Triticum aestivum

Type:: Expression profiling by SAGE

Platform:: GPL7079
6 Samples

Download data

Series

Accession:: GSE12832

ID:: 200012832

PubMed Full text in PMC Similar studies

Select item 20002075717.

miRNA expression profiling in embryonic chicken heart

(Submitter supplied) MicroRNAs are small non-coding RNA transcripts that regulate post-transcriptional gene expression. The millions of short sequence reads generated by next generation sequencing technologies make this technique explicitly suitable for profiling of known and novel microRNAs. A modification to the small-RNA expression kit (SREK, Ambion) library preparation method for the SOLiD sequencing platform is described to generate microRNA sequencing libraries that are compatible with the Illumina Genome Analyzer. more...

Organism:: Gallus gallus

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL9385
5 Samples

Download data: WIG

Series

Accession:: GSE20757

ID:: 200020757

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20000115818.

Wilms tumor versus Stratagene Universal Reference

(Submitter supplied) Gene expression comparison of Wilms tumor RNA versus Stratagene Universal reference RNA Keywords: repeat sample

Organism:: Homo sapiens

Type:: Expression profiling by array

Dataset:: GDS1791
Platform:: GPL96
4 Samples

Download data

Series

Accession:: GSE1158

ID:: 200001158

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 179119.

Wilms' tumor

Expression profiling of Wilms' tumor tissue after pre-operative chemotherapy. Stratagene Universal Reference RNA also examined. Results are part of a cross-platform evaluation and compared to data generated from Serial Analysis of Gene Expression.

Organism:: Homo sapiens

Type:: Expression profiling by array, count, 2 other sets

Platform:: GPL96
Series:: GSE1158
4 Samples

Download data

DataSet

Accession:: GDS1791

ID:: 1791

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 20000050420.

Comparative molecular analysis of developing mouse forelimbs and hindlimbs

(Submitter supplied) The analysis of differentially expressed genes is a powerful approach to elucidate the genetic mechanisms underlying the morphological and evolutionary diversity among serially homologous structures, both within the same organism (e.g., hand vs. foot) and between different species (e.g., hand vs. wing). In the developing embryo, limb-specific expression of Pitx1, Tbx4, and Tbx5 regulates the determination of limb identity. more...

Organism:: Mus musculus

Type:: Expression profiling by SAGE

Platform:: GPL11
2 Samples

Download data

Series

Accession:: GSE504

ID:: 200000504

PubMed Full text in PMC Similar studies

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