GEO DataSets

(Submitter supplied) Global gene expression was compared between roots of cotton plants (variety Sicot 71) flooded for 4 hours and roots of unflooded cotton plants. Global gene expression was also compared between leaves of cotton plants (variety Sicot 71) flooded for 24 hours and leaves of unflooded cotton plants. Waterlogging stress causes yield reductions in cotton (Gossypium hirsutum L.). A major component of waterlogging stress is the lack of oxygen available to submerged tissues. more...

Organism:

Gossypium hirsutum; Gossypium raimondii; Gossypium arboreum; Gossypium barbadense

Type:

Expression profiling by array

Dataset:

GDS3757

Platform:

GPL8672

8 Samples

Download data: CEL

Analysis of root and leaf tissue from partially-submerged, two-leaf stage plants at four and twenty-four hours post-flooding. A major component of waterlogging stress is the lack of oxygen available to submerged tissues. Results provide insight into the molecular responses to waterlogging in plants.

Organism:

Gossypium barbadense; Gossypium hirsutum; Gossypium arboreum; Gossypium raimondii

Type:

Expression profiling by array, transformed count, 2 stress, 2 tissue sets

Platform:

GPL8672

Series:

GSE16467

8 Samples

Download data: CEL

(Submitter supplied) A gene expression profiling study on two major cotton species that are cultivated for fibre, Gossypium hirsutum (L.) and Gossypium barbadense (L.), at different stages during fibre development using a printed cDNA microarray was undertaken to identify potential candidate genes for manipulation to improve fibre quality. Keywords: Species comparison, development

Organism:

Gossypium hirsutum; Gossypium barbadense

Type:

Expression profiling by array

Platform:

GPL4043

18 Samples

Download data: GPR

(Submitter supplied) Cotton is one of the most commercially important Fiber crops in the world and used as a source for natural textile Fiber and cottonseed oil. The fuzzless-lintless ovules of cotton mutants are ideal source for identifying genes involved in Fiber development by comparing with Fiber bearing ovules of wild-type. To decipher molecular mechanisms involved in Fiber cell development, transcriptome analysis has been carried out by comparing G. more...

Organism:

Gossypium barbadense; Gossypium raimondii; Gossypium hirsutum; Gossypium arboreum

Type:

Expression profiling by array

Platform:

GPL8672

30 Samples

Download data: CEL, CHP

(Submitter supplied) Periods of soil water deficit could occur at any time during the crop season, but maize is particularly sensitive to water stress around flowering time. At this time the stress usually causes remarkable yield loss. Heading time, which is just before tassel flowering, is one of the most important stages that maize productivity would be affected severely if plants encounter water stress. The whole-genomic gene expression changes of maize plants in response to water deficit stress at this stage have not been studied. more...

Organism:

Zea mays

Type:

Expression profiling by array

Platforms:

GPL5439 GPL5440

8 Samples

Download data: GPR

(Submitter supplied) Global gene expression was compared between root RNA samples from three-week-old Arabidopsis Col-0 plants subjected to 0.1% oxygen (balance nitrogen) or ambient atmospheric conditions.

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array

Platform:

GPL198

4 Samples

Download data: CEL

(Submitter supplied) The molecular responses of Grey poplar (Populus x canescens) following root hypoxia were studied in roots and leaves using transcript profiling. Grey poplar is a flooding tolerant tree species and analysis of the molecular response to hypoxia may indicate possible adaptation mechanisms to this stress.

Organism:

Populus sp.; Populus tremula x Populus alba

Type:

Expression profiling by array

Platform:

GPL4359

30 Samples

Download data: CEL, CHP

(Submitter supplied) To better understand the molecular mechanisms of the response of S. cannabina to soil waterlogging, the transcriptional profile in both short and long term of waterlogged S. cannabina roots were performed using the Illumina HiSeq™ 2000 sequencing platform (Illumina Inc., San Diego, CA, USA). Bioinformatic analysis of transcriptome data was performed to allow identification and functional annotation of differentially expressed genes (DEGs). more...

Organism:

Sesbania cannabina

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22825

6 Samples

Download data: FASTA, TXT

(Submitter supplied) Gene expression analysis by high-throughtput RNA-sequencing from roots of waterlogged jatropha (Jatropha curcas). Six leaf stage seedlings (~30 d.o.) were subjected to 24 h of soil waterlogging.

Organism:

Jatropha curcas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18661

4 Samples

Download data: GFF, TXT

(Submitter supplied) Waterlogging is one major stress for crops and causes multiple problems for plants, for example low gas diffusion, reducing conditions in the soil and accumulation of toxic metabolites. Brassica napus is an important oil crop with high waterlogging sensitivity, which may cause severe yield losses. Its reactions to the stress are not fully understood. In this work the transcriptional response of rapeseed to one aspect of waterlogging, hypoxia in the root zone, was analyzed, including two rapeseed cultivars from different origin, Avatar from Europe and Zhongshuang 9 from Asia. more...

Organism:

Brassica napus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26890

36 Samples

Download data: TSV

(Submitter supplied) Waterlogging is a major abiotic stress causing oxygen depletion and carbon dioxide accumulation in the rhizosphere. Barley is more susceptible to waterlogging stress than other cereals. To gain a better understanding of the effect of waterlogging stress in barley, we carried out a genome-wide gene expression analysis in roots of Yerong and Deder2 barley genotypes under waterlogging and control (well-watered) conditions by RNA-Sequencing, using Illumina HiSeq™ 4000 platform.

Organism:

Hordeum vulgare

Type:

Expression profiling by high throughput sequencing

Platform:

GPL28029

32 Samples

Download data: XLS

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Gossypium hirsutum; Zea mays

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL24163 GPL27127

24 Samples

Download data

(Submitter supplied) Cotton seedlings were subjected to water-deficit stress along with control condition for 24 hours or 48 hours and tissues emcompassing the elongation zone of primary roots were analysed for differential accumulated transcripts compared to control.

Organism:

Gossypium hirsutum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27127

12 Samples

Download data: XLSX

(Submitter supplied) Maize seedlings were subjected to water-deficit stress along with control condition for 24 hours or 48 hours and tissues emcompassing the elongation zone of primary roots were analysed for differential accumulated transcripts compared to control.

Organism:

Zea mays

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24163

12 Samples

Download data: XLSX