Development and validation of a microarray for the investigation of the CAZymes encoded by the human gut microbiome - - GEO DataSets - NCBI

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Development and validation of a microarray for the investigation of the CAZymes encoded by the human gut microbiome

(Submitter supplied) Distal gut bacteria play a pivotal role in the digestion of dietary polysaccharides by producing a large number of carbohydrate-active enzymes (CAZymes) that the host otherwise does not produce. We report here the design of a high density custom microarray that we used to spot non-redundant DNA probes for more than 6,500 genes encoding glycoside hydrolases and lyases selected from 174 reference genomes from distal gut bacteria. more...

Organism:: human gut metagenome

Type:: Genome variation profiling by array

Platform:: GPL17807
8 Samples

Download data: TXT

Series

Accession:: GSE51760

ID:: 200051760

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GEO DataSet Links for BioProject (Select 224976) (1)
GEO DataSets
Development and validation of a microarray for the investigation of the CAZymes ...
Development and validation of a microarray for the investigation of the CAZymes encoded by the human gut microbiome
Accession: GSE51760

GEO DataSets
MULTISPECIES: serine hydrolase [Pseudomonadota]
MULTISPECIES: serine hydrolase [Pseudomonadota]
gi|1011450356|ref|WP_062347427.1|

Protein
Conserved Domain Links for Gene (Select 10723) (1)
Conserved Domains
class I mannose-6-phosphate isomerase [Cronobacter sakazakii]
class I mannose-6-phosphate isomerase [Cronobacter sakazakii]
gi|495176698|ref|WP_007901492.1|

Protein

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