GEO DataSets

(Submitter supplied) This work represents the first epigenomic study carried out on saffron crocus. Five accessions of saffron, showing differences in tepal pigmentation, yield of saffron and flowering time, were analysed at the epigenetic level by applying a methylation-sensitive restriction enzyme-sequencing (MRE-seq) approach. Five accession-specific hypomethylomes plus a reference hypomethylome, generated by combining the sequence data from the single accessions, were obtained. more...

Organism:

Crocus sativus

Type:

Genome variation profiling by high throughput sequencing

Platform:

GPL29706

5 Samples

Download data: VCF

(Submitter supplied) Background: Crocus sativus L. belongs to the Iridaceae family and its dried stigma, called saffron, is one of the world’s most expensive spice. C. sativus is also a famous medicinal plant on account of producing significant pharmaceutical apocarotenoids like crocins, crocetin, picrocrocin and safranal. These metabolites have been reported to play important pharmacological efficiency towards many diseases. more...

Organism:

Crocus sativus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23962

9 Samples

Download data: FA, TXT

(Submitter supplied) In this study, we aim to present a global transcriptome analysis of medicinal/spice plant, Crocus sativus. We generated about 206 million high-quality reads from five tissues (corm, leaf, Tepal, stamen and stigma) using Illumina platform. We performed an optimized de novo assembly of the reads and estimated transcript abundance in different tissue samples. The transcriptome dynamics was studied by differential gene expression analyses among tissue samples.

Organism:

Crocus sativus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19669

5 Samples

Download data: TXT