GEO DataSets

(Submitter supplied) Many trees form ectomycorrhizal symbiosis with fungi. During symbiosis, the tree roots supply sugar to the fungi in exchange for nitrogen, and this process is critical for the nitrogen and carbon cycles in forest ecosystems. However, the extents to which ectomycorrhizal fungi can liberate nitrogen and modify the soil organic matter and the mechanisms by which they do so remain unclear since they have lost many enzymes for litter decomposition that were present in their free-living, saprotrophic ancestors. more...

Organism:

Paxillus involutus; Laccaria bicolor

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL19511 GPL19637

24 Samples

Download data: TAB

(Submitter supplied) Decomposition of soil organic matter in forest soils is thought to be controlled by the activity of saprotrophic fungi, while biotrophic fungi including ectomycorrhizal fungi act as vectors for input of plant carbon. The limited decomposing ability of ectomycorrhizal fungi is supported by recent findings showing that they have lost many of the genes that encode hydrolytic plant cell-wall degrading enzymes in their saprophytic ancestors. more...

Organism:

Laccaria bicolor; Coniophora puteana; Suillus luteus; Serpula lacrymans; Jaapia argillacea; Paxillus involutus; Hebeloma cylindrosporum; Piloderma croceum; Hydnomerulius pinastri

Type:

Expression profiling by high throughput sequencing

9 related Platforms

54 Samples

Download data: TAB

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Suillus luteus; Amanita muscaria; Hebeloma cylindrosporum; Oidiodendron maius; Tulasnella calospora; Piloderma croceum; Serendipita vermifera; Paxillus involutus

Type:

Expression profiling by high throughput sequencing

10 related Platforms

42 Samples

Download data: TXT

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Paxillus involutus ectomycorrhizal roots compared to mycelium patches . Mycorrhizal roots were harvested after 4 weeks, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Paxillus involutus (http://genome.jgi-psf.org/Paxin1/Paxin1.home.html) using CLC Genomics Workbench 6.

Organism:

Paxillus involutus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19511

4 Samples

Download data: TXT

(Submitter supplied) Ectomycorrhizal fungi are dependent on host trees for carbon supply. In return ectomycorrhizal fungi supply trees with water and nutrients. It is known that when ectomycorrhizal fungi have exploited a nutrient rich patch in soil, the carbon allocation to mycelia in that patch is reduced, with the consequence of mycelia dying, but less is known of the dynamics of this senescence. We cultivated the ectomycorrhizal fungus Paxillus involutus in an axenic system. more...

Organism:

Paxillus involutus ATCC 200175; Paxillus involutus

Type:

Expression profiling by array

Platform:

GPL14950

12 Samples

Download data: CALLS, PAIR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Paxillus involutus; Paxillus involutus ATCC 200175

Type:

Expression profiling by array

Platform:

GPL14950

21 Samples

Download data: PAIR

(Submitter supplied) Abstract: Proteins contribute to a major part of the organic nitrogen in forest soils. This nitrogen is mobilized and becomes available to trees as a result of the depolymerizing activities of symbiotic ectomycorrhizal fungi. The mechanisms by which these fungi depolymerize proteins and assimilate the released nitrogen are poorly characterized. Biochemical analysis and transcriptome profiling were performed to examine the proteolytic machinery and the uptake system of the ectomycorrhizal basidiomycete Paxillus involutus during the assimilation of organic nitrogen from various protein sources and extracts of organic matter. more...

Organism:

Paxillus involutus; Paxillus involutus ATCC 200175

Type:

Expression profiling by array

Platform:

GPL14950

12 Samples

Download data: PAIR

(Submitter supplied) Abstract: Proteins contribute to a major part of the organic nitrogen in forest soils. This nitrogen is mobilized and becomes available to trees as a result of the depolymerizing activities of symbiotic ectomycorrhizal fungi. The mechanisms by which these fungi depolymerize proteins and assimilate the released nitrogen are poorly characterized. Biochemical analysis and transcriptome profiling were performed to examine the proteolytic machinery and the uptake system of the ectomycorrhizal basidiomycete Paxillus involutus during the assimilation of organic nitrogen from various protein sources and extracts of organic matter. more...

Organism:

Paxillus involutus; Paxillus involutus ATCC 200175

Type:

Expression profiling by array

Platform:

GPL14950

9 Samples

Download data: PAIR

(Submitter supplied) Abstract: A large part of the nitrogen in forest soils is found in recalcitrant organic matter-protein complexes. Ectomycorrhizal fungi are thought to have a key role in the decomposition and mobilization of nitrogen from such complexes. The knowledge on the functional mechanisms of these processes, and how they are regulated by carbon from the host plant and the availability of more easily available forms of nitrogen sources are limited. more...

Organism:

Paxillus involutus ATCC 200175

Type:

Expression profiling by array

Platform:

GPL14950

12 Samples

Download data: CALLS, PAIR

(Submitter supplied) In this study, examinations were performed on how the ECM fungus Paxillus involutus degrade complex, plant and litter material by using elemental analyses, FTIR spectroscopy, pyrolysis-GC/MS, and synchronous fluorescence spectroscopy together with microarray analyses screening 12,214 gene models, derived from 454 sequenced cDNA libraries. Rineau, F., Roth, D., Shah, F., Smits, M., Johansson, T., Canbäck, B., Bjarke Olsen, P., Persson, P., Nedergaard Grell, M., Lange, L., & Tunlid, A. more...

Organism:

Paxillus involutus ATCC 200175; Paxillus involutus

Type:

Expression profiling by array

Platform:

GPL14950

18 Samples

Download data: CALLS, PAIR

(Submitter supplied) NimbleGen design name 101221_ATTCC200175_TJ_EXP_HX12 NimbleGen design OID 33038 NimbleGen DESIGN_ID: 546871 A expression design for 12,214 gene models from the ectomycorrhizal fungus Paxillus involutus ATCC 200175 with approx. 10 tiled 60-mer probes per gene. A web database containing sequences and annotation for the 12,214 gene models here used (mbio-serv2.mbioekol.lu.se/Paxillus/Hybrid/) native array description file: 101221_ATCC200175_TJ_EXP.ndf native array description file: 101221_ATCC200175_TJ_EXP.ngd Protocol: High-density 12-plex DNA arrays (HD2: 12x135K Format) prepared with Maskless Array Synthesizer (MAS) technology (www.nimblegen.com).

Organism:

Paxillus involutus ATCC 200175

6 Series

63 Samples

Download data: NDF, NGD