txid6695[Organism:exp] - GEO DataSets

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Select item 2002222551.

Analysis of the transcriptome, proteome, histological, and biochemical profiles of oriental river prawn Macrobrachium nipponense under long-term salinity exposure

(Submitter supplied) the transcriptome changes in long-term different salinity gradients were determined to investigate the related gene responsible for the molecular involvements to M. nipponense after long-term salinity exposure.

Organism:: Macrobrachium nipponense

Type:: Expression profiling by high throughput sequencing

Platform:: GPL21541
36 Samples

Download data: XLS

Series

Accession:: GSE222255

ID:: 200222255

Select item 2002123852.

Gut microbiomes associated with hepatopancreatic and gonadal transcriptomes and their impact on growth traits in M. rosenbergii

(Submitter supplied) With the increasing global demand for high-quality protein resources, improving the feed utilization rate and growth rate of aquaculture animals is the main way to solve the shortage of high-quality animal protein for humans. Improving the growth rate of Macrobrachium rosenbergii, the world's second most-produced freshwater prawn, is of particular importance for increasing the supply of high-quality protein to humans. more...

Organism:: Macrobrachium rosenbergii

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29995
20 Samples

Download data: FASTA, TXT

Series

Accession:: GSE212385

ID:: 200212385

Select item 2001718233.

RNA-sequencing and function analysis of adult gonad tissue identify potential key transcription factors in Macrobrachium resenbergii with sex determination

(Submitter supplied) M. rosenbergii is a classical aquatic organism with sex-reversed phenomenon by gene-expressed regulation. Reversal of gonad development in M. rosenbergii received great attention but the role of transcription factors for gonadal maintenance and sex determination in adult shrimps remain unclearly. In this study, we sequencing the transcriptomes for the adult testis, ovary and androgenic gland by third-generation sequencing plus second-generation sequencing, and 21,345 were identified. more...

Organism:: Macrobrachium rosenbergii

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29995
9 Samples

Download data: FASTA, TXT

Series

Accession:: GSE171823

ID:: 200171823

SRA Run Selector

Select item 2000811884.

Genome-wide identification of eggplant (Solanum melongena L.) miRNAs and their targets reveals differential regulation of heterostyly

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Solanum virginianum; Macrobrachium nipponense

Type:: Non-coding RNA profiling by array; Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platforms:: GPL21817 GPL21816
8 Samples

Download data: TXT

Series

Accession:: GSE81188

ID:: 200081188

Analyze with GEO2R

Select item 2000811855.

Genome-wide identification of eggplant (Solanum melongena L.) miRNAs and their targets reveals differential regulation of heterostyly [Array]

(Submitter supplied) MicroRNAs (miRNAs), a class of endogenous, non-coding, ~21 nucleotide RNAs, regulate the expression of their target genes by mRNA cleavage or translation inhibition. In plants, miRNAs have been demonstrated to play crucial roles in regulating diverse cellular, physiological, and developmental processes. The identification of all the miRNAs is not yet complete; there are no studies on their possible links with the difference in heterostyly observed in eggplant (Solanum melongena L.).

Organism:: Macrobrachium nipponense; Solanum virginianum

Type:: Non-coding RNA profiling by array

Platform:: GPL21816
6 Samples

Download data: TXT

Series

Accession:: GSE81185

ID:: 200081185

Analyze with GEO2R

Select item 2000746846.

Transcriptome sequencing of Macrobrachium nipponense hepatopancreas at different nitrite concentrations

(Submitter supplied) Macrobrachium nipponense is one of the commonest species threatened by ambient superfluous nitrite. The mechanism of nitrite stress at the molecular level was studied using de novo RNA-Seq to explore the molecular pathways in M. nipponense exposed to the acute nitrite stress (26.05 mg/L nitrite-N) for 24h and the chronic nitrite stress (6.58 mg/L nitrite-N) for 21d. A total of 175.13 million reads were obtained and assembled into 58,871 unigenes with an average length of 1,028.7 bp and N50 of 1,294bp. more...

Organism:: Macrobrachium nipponense

Type:: Expression profiling by high throughput sequencing

Platform:: GPL20857
4 Samples

Download data: FA, TXT

Series

Accession:: GSE74684

ID:: 200074684

PubMed Similar studies SRA Run Selector

Select item 2000724187.

Identification and characterization analysis of the Oriental River Prawn (Macrobrachium nipponense) microRNA response to hypoxia using a deep sequencing approach

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Macrobrachium nipponense

Type:: Non-coding RNA profiling by array; Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL20856 GPL20857
7 Samples

Download data: TXT, XLS

Series

Accession:: GSE72418

ID:: 200072418

Analyze with GEO2R

Select item 2000724178.

Identification and characterization analysis of the Oriental River Prawn (Macrobrachium nipponense) microRNA response to hypoxia using a deep sequencing approach [miRNA-Seq]

(Submitter supplied) MicroRNAs (miRNAs) function as regulators in a broad range of phenotypes. The Oriental River Prawn (Macrobrachium nipponense) is an important commercial species that is widely distributed in freshwater and low-salinity estuarine regions of China and other Asian countries. To date, there are no reports describing M. nipponense miRNAs.

Organism:: Macrobrachium nipponense

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL20857
1 Sample

Download data: XLS

Series

Accession:: GSE72417

ID:: 200072417

SRA Run Selector

Select item 2000724169.

Identification and characterization analysis of the Oriental River Prawn (Macrobrachium nipponense) microRNA response to hypoxia using a deep sequencing approach [miRNA microarray analysis]

Organism:: Macrobrachium nipponense

Type:: Non-coding RNA profiling by array

Platform:: GPL20856
6 Samples

Download data: TXT

Series

Accession:: GSE72416

ID:: 200072416

Analyze with GEO2R

Select item 20007878810.

Transcriptome analysis of Macrobrachium nipponense : genes and expression profile from hepatopancreas and muscle

(Submitter supplied) To identify genes involved in nutrition metabolism of Macrobrachium nipponense, two independent cDNA libraries from hepatopancreas and muscle were constructed through high-throughput next-generation sequencing techniques. A total of 112,548,142 and 90,140,774 high quality reads were generated in the two cDNA libraries, respectively. Clustering and assembly of these reads produced a nonredundant set of 98,560 unique sequences, with an average unigene length of 793 bp. more...

Organism:: Macrobrachium nipponense

Type:: Expression profiling by high throughput sequencing

Platform:: GPL21541
2 Samples

Download data: FASTA, TXT

Series

Accession:: GSE78788

ID:: 200078788

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20000485311.

Grass shrimp SAGE libraries

(Submitter supplied) Adult male grass shrimp were exposed for 96 hours to LC50 concentrations of either Fipronil, Endosulfan, or Cadmium, as well as a Carrier Control exposure. RNA was extracted from whole-body homogenates using the RNABee kit. Tags were clustered to identify tags diagnostic of the different exposures. Keywords: SAGE, Grass shrimp, ecotoxicogenomics

Organism:: Palaemon pugio

Type:: Expression profiling by SAGE

Platform:: GPL3770
4 Samples

Download data

Series

Accession:: GSE4853

ID:: 200004853

Select item 10002999512.

Illumina HiSeq 4000 (Macrobrachium rosenbergii)

Organism:: Macrobrachium rosenbergii

2 Series
29 Samples

Download data

Platform

Accession:: GPL29995

ID:: 100029995

Select item 10002181613.

LC Sciences Eggplant miRNA Array

(Submitter supplied) Version No. miREggplant_GAAS Protocol: Gao, X., Gulari, E., and Zhou, X. (2004) In situ synthesis of oligonucleotide microarrays. Biopolymers 73, 579-596; (b) Zhu, Q., Hong, A., Sheng, N., Zhang, X., Jun, K.-Y., Srivannavit, O., Gulari, E., Gao, X., and Zhou, X. (2007) Microfluidic biochip for nucleic acid and protein analysis. in Methods Mol. Biol. Ed. Rampal, J. B. 382:287-312.;Bolstad, B. M., Irizarry, R. more...

Organism:: Macrobrachium nipponense

2 Series
6 Samples

Download data: XLS

Platform

Accession:: GPL21816

ID:: 100021816

Select item 10002085614.

LC Sciences Macrobrachium nipponense LCB_D140423

(Submitter supplied) Gao, X., Gulari, E., and Zhou, X. (2004) In situ synthesis of oligonucleotide microarrays. Biopolymers 73, 579-596; (b) Zhu, Q., Hong, A., Sheng, N., Zhang, X., Jun, K.-Y., Srivannavit, O., Gulari, E., Gao, X., and Zhou, X. (2007) Microfluidic biochip for nucleic acid and protein analysis. in Methods Mol. Biol. Ed. Rampal, J. B. 382:287-312.;Bolstad, B. M., Irizarry, R. A., Astrandand, M., Speed, T. more...