GEO DataSets

(Submitter supplied) Purpose: Klebsiella oxytoca M5a1 (previously Klebsiella pneumonia M5a1) is a principle model organism for free-living biological nitrogen fixation. This strain has been used for decades in the characterisation of nitrogenase function and the genetic regulation of nitrogen fixation physiology. Currently it represents a key model for synthetic biology and biotechnology approaches. This project involves a multi-omics approach to modelling nitrogen physiology in Klebsiella oxytoca M5a1, in order to inform rational genetic engineering for improved nitrogen fixation activity. more...

Organism:

Klebsiella oxytoca

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29593

3 Samples

Download data: XLS

(Submitter supplied) In planktonic and biofilm mimicking environments, the staphyloccocal transcriptome in t111+t13595 co-cultures showed significant upregulation of genes related to virulence factors contrary to those co-cultures with B. thuringiesis and K. oxytoca. In the biofilm polymicrobial environment, S. aureus transcriptome shows extensive downregulation of gene expression. The animal model co-infection with S. more...

Organism:

Bacillus thuringiensis; Klebsiella oxytoca; Staphylococcus aureus

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL28182 GPL28183 GPL20673

64 Samples

Download data: RPKM