GEO DataSets

(Submitter supplied) We constructed seven small RNA libraries of Rhizoctonia solani AG1 IA and sequenced using Illumina GA II. The seven samples include mycelium cultured on PDA without rice incubated, 6 different stages at 10 hours (10h), 18h, 24h, 32h, 48h and 72h spanning the Rhizoctonia solani AG1 strains infection rice. We identified miRNA-like small RNAs (milRNAs) using MIREAP and mirdeep2. The milRNAs were used for further analysis of interactions between milRNA and mRNA that may involve in plant-infection.

Organism:

Rhizoctonia solani

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL20105

7 Samples

Download data: FA, TXT

(Submitter supplied) Improved understanding of bacterial-fungal interactions in the rhizosphere should assist in the successful application of bacteria as biological control agents against fungal pathogens of plants, providing alternatives to chemicals in sustainable agriculture. To understand the functional response of the fungal phytopathogen Rhizoctonia solani to different bacteria and to elucidate whether the molecular mechanisms that the fungus exploits involve general stress or more specific responses, we performed a global transcriptome profiling of R. more...

Organism:

Rhizoctonia solani AG-3 Rhs1AP

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19862

9 Samples

Download data: TXT

(Submitter supplied) Analysis of RNA expression of Rhizoctonia solani AG1 IA. mRNA-seq of R. solani AG1 IA at 6 timepoints during the plant infection were sequenced. Cufflinks was used for calculating expected fragments per kilobase of transcript per million fragments sequenced (FPKM) values. Expression and regulation were identified. Analysis provides suggestion for discovering novel effectors and understanding pathogen factors.

Organism:

Rhizoctonia solani AG-1 IA

Type:

Expression profiling by high throughput sequencing

Platform:

GPL15038

6 Samples

Download data: TXT

(Submitter supplied) A self-designed Trichoderma high density oligonuclotide (HDO) microarray (Roche-NimbleGen, Inc., Madison, WI, USA) was constructed in a similar way than a previous Trichoderma HDO microarray (Samolski et al., 2009). The microarray was composed of 392,779 60-mer probes designed against 13,443 EST-derived transcripts (Trichochip-1) and the genomes of T. atroviride (11,100 genes) and T. virens (11,643 genes). more...

Organism:

Trichoderma virens; Trichoderma atroviride; Rhizoctonia solani

Type:

Expression profiling by array

Platform:

GPL10100

6 Samples

Download data: CALLS, PAIR