GEO DataSets

(Submitter supplied) Background DNA methylation in the form of 5-methylcytosine (5mC) is the most abundant base modification in animals. However, 5mC levels vary widely across taxa. Whilst vertebrate genomes are hypermethylated, in most invertebrates, 5mC concentrates on constantly and highly transcribed genes (gene body methylation; GbM) and, in some species, on transposable elements (TEs), a pattern known as ‘mosaic’. more...

Organism:

Owenia fusiformis; Capitella teleta; Dimorphilus gyrociliatus

Type:

Methylation profiling by high throughput sequencing

6 related Platforms

35 Samples

Download data: BED, CGMAP, TXT

(Submitter supplied) Capitella teleta is a model specie in marine annelids research, to gain insight into its development, we performed time-course ATAC-seq ranging from 64 cell to stage 8 larvae, to profiling the gene regulation dynamics

Organism:

Capitella teleta

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL31133

10 Samples

Download data: NARROWPEAK, TXT

(Submitter supplied) Capitella teleta is a model specie in marine annelids research, to gain insight into its development, we performed time-course RNA-seq ranging from 64 cell to stage 7 larvae, to profiling the gene expression dynamics

Organism:

Capitella teleta

Type:

Expression profiling by high throughput sequencing

Platform:

GPL31133

10 Samples

Download data: TXT

(Submitter supplied) Here we use a whole-organism, single-cell transcriptomic approach to map larval cell types in the annelid Capitella teleta at 24- and 48-hours post gastrulation (stages 4 and 5). We identified eight unique cell clusters (undifferentiated precursors, ectoderm, muscle, ciliary-band, gut, neurons, neurosecretory cells and protonephridia), thus helping to identify previously uncharacterized molecular signatures such as novel myogenic and neurosecretory cell markers. more...

Organism:

Capitella teleta

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29252

2 Samples

Download data: MTX, TSV

(Submitter supplied) Transcript abundances were examined in single Capitella teleta embryos at three timepoints: 8-cell, 16-cell, and 32-cell stage. 

Organism:

Capitella teleta

Type:

Expression profiling by high throughput sequencing

Platform:

GPL28854

12 Samples

Download data: CSV, TXT