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Items: 1 to 20 of 105

1.

Transcriptome analysis of gene expression in Lasiodiplodia theobromae

(Submitter supplied) Botryosphaeriaceae is an important fungal family that can colonize a wide range of woody hosts including economically important plants and cause serious diseases worldwide. To uncover the virulence variation in Lasiodiplodia theobromae, we sequenced the transcriptome of Las1 in L. theobromae inoculated with the stems of V.vinifera using dual-RNAseq method. We found a lot of expanded genes were induced after inoculated with grapevine compared with the transcriptome of Las1 that was maintained in PDA under the same condition.
Organism:
Lasiodiplodia theobromae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL31058
6 Samples
Download data: FA, TXT
Series
Accession:
GSE190625
ID:
200190625

SRA Run Selector

2.

sRNA profiling in Botryosphaeria dothidea reveals a differentially expressed miRNA named Bdo-milR-204 response to heat stress

(Submitter supplied) RNA sequencing was applied to detected miRNA profiles of Botryosphaeria dothidea
Organism:
Botryosphaeria dothidea
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL24719
3 Samples
Download data: TXT
Series
Accession:
GSE111649
ID:
200111649

SRA Run Selector

3.

Multi-omics analyses reveal the molecular pathogenesis toolkit of Lasiodiplodia hormozganensis, a cross-kingdom pathogen

(Submitter supplied) The transcriptome of L. hormozganensis CBS339.90 grown at 25 °C and 37 °C was sequenced by Illumina TruSeq. The aim of this study was to understand the effect that temperatures have on the biology of L. hormozganensis strain CBS339.90, specifically on the molecular effectors of pathogenesis.
Organism:
Lasiodiplodia hormozganensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26676
6 Samples
Download data: TXT
Series
Accession:
GSE131342
ID:
200131342

SRA Run Selector

4.

Dual RNA-Sequencing of Vitis vinifera During Lasiodiplodia theobromae Infection Unveils Host-Pathogen Interactions

(Submitter supplied) We report the use of a Dual RNA-Seq approach to investigate the interaction of grapevine with the Botryosphaeria dieback agent L. theobromae. The aim of this work was to (1) identify pathogenicity factors produced by L. theobromae, and (2) determine the V. vinifera defence response to the pathogen.
Organism:
Vitis vinifera; Lasiodiplodia theobromae
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL26369 GPL24368
24 Samples
Download data: GFF, TXT
Series
Accession:
GSE129109
ID:
200129109

PubMed Full text in PMC Similar studies SRA Run Selector

5.

Genetic determinants of endophytism in the Arabidopsis root mycobiome

(Submitter supplied) Roots of Arabidopsis thaliana do not engage in symbiotic association with mycorrhizal fungi but host taxonomically diverse fungal communities that influence health and disease states. We sequenced the genomes of 41 isolates representative of the A. thaliana root mycobiota for comparative analysis with 79 other plant-associated fungi. We report that root mycobiota members evolved from ancestors having diverse lifestyles and retained diverse repertoires of plant cell wall-degrading enzymes (PCWDEs) and effector-like small secreted proteins. more...
Organism:
Paraphoma chrysanthemicola; Macrophomina phaseolina; Phaeosphaeria sp.; Truncatella angustata; Chaetomium sp. MPI-CAGE-AT-0009; Phaeosphaeria sp. MPI-PUGE-AT-0046c; Arabidopsis thaliana; Halenospora varia; Chaetomium sp.
Type:
Expression profiling by high throughput sequencing
13 related Platforms
39 Samples
Download data: CSV
Series
Accession:
GSE169629
ID:
200169629

PubMed Full text in PMC Similar studies SRA Run Selector

6.

A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes

(Submitter supplied) A multi-omics approach was used to understand how temperature affects the molecular mechanisms of pathogenicity of Lasiodiplodia theobromae at different temperatures. The transcriptome (Illumina TruSeq) of LA-SOL3 strain grown at 25 °C and 37 °C was analysed.
Organism:
Lasiodiplodia theobromae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26675
6 Samples
Download data: TXT
Series
Accession:
GSE131341
ID:
200131341

PubMed Full text in PMC Similar studies SRA Run Selector

7.

RNA-seq profiling in Botryosphaeria dothidea reveals differentially expressed genes response to heat stress

(Submitter supplied) RNA-seq sequencing was applied to detected differentially expressed genes response to heat stress in Botryosphaeria dothidea
Organism:
Botryosphaeria dothidea
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24887
3 Samples
Download data: FASTA, TXT
Series
Accession:
GSE113083
ID:
200113083

SRA Run Selector

8.

Genome-wide expression profiling of Neofusicoccum parvum virulence factors in response to different growth substrates in vitro and during an interaction time course with grapevine stems

(Submitter supplied) Transcriptome profiling by RNA sequencing determined the genome-wide patterns of expression of N. parvum virulence factors when PDA or grape wood were provided as nutrient source and during an extensive interaction time course with grapevine stem.
Organism:
Vitis vinifera; Neofusicoccum parvum
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL22266 GPL22265
30 Samples
Download data: FASTA, TXT
Series
Accession:
GSE85079
ID:
200085079

PubMed Full text in PMC Similar studies SRA Run Selector

9.

Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

(Submitter supplied) Purpose: Lasiodiplodia theobromae is a pathogenic fungus causing Botryosphaeria dieback in grapevine. Heat and drought stress was suggested to promote the disease incidence in recent years, therefore we decided to evaluate the effect of heat on in vitro experiment, adding grapevine wood to simulate the environment in the trunk during in field infection. Methods: Fungal mRNA was extracted from mycellium collected after 49 hours of growth without stress in the presence of GW (GW_noHS) or in its absence (VS_noHS). more...
Organism:
Lasiodiplodia theobromae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21236
12 Samples
Download data: FASTA, TXT
Series
Accession:
GSE75978
ID:
200075978

PubMed Full text in PMC Similar studies SRA Run Selector

10.

Illumina NovaSeq 6000 (Lasiodiplodia iranensis)

Organism:
Lasiodiplodia iranensis
Download data
Platform
Accession:
GPL34264
ID:
100034264

11.

Illumina HiSeq 4000 (Lasiodiplodia theobromae)

Organism:
Lasiodiplodia theobromae
1 Series
6 Samples
Download data
Platform
Accession:
GPL31058
ID:
100031058

12.

Illumina HiSeq 3000 (Arabidopsis thaliana; Macrophomina phaseolina)

Organism:
Arabidopsis thaliana; Macrophomina phaseolina
1 Series
3 Samples
Download data
Platform
Accession:
GPL29931
ID:
100029931

13.

Illumina HiSeq 3000 (Macrophomina phaseolina)

Organism:
Macrophomina phaseolina
1 Series
3 Samples
Download data
Platform
Accession:
GPL29930
ID:
100029930

14.

Illumina NextSeq 500 (Lasiodiplodia hormozganensis)

Organism:
Lasiodiplodia hormozganensis
1 Series
6 Samples
Download data
Platform
Accession:
GPL26676
ID:
100026676

15.

Illumina NextSeq 500 (Lasiodiplodia theobromae)

Organism:
Lasiodiplodia theobromae
1 Series
6 Samples
Download data
Platform
Accession:
GPL26675
ID:
100026675

16.

Illumina NextSeq 500 (Lasiodiplodia theobromae; Vitis vinifera)

Organism:
Vitis vinifera; Lasiodiplodia theobromae
1 Series
12 Samples
Download data
Platform
Accession:
GPL26369
ID:
100026369

17.

Illumina HiSeq 4000 (Botryosphaeria dothidea)

Organism:
Botryosphaeria dothidea
1 Series
3 Samples
Download data
Platform
Accession:
GPL24887
ID:
100024887

18.

Illumina HiSeq 2500 (Botryosphaeria dothidea)

Organism:
Botryosphaeria dothidea
1 Series
3 Samples
Download data
Platform
Accession:
GPL24719
ID:
100024719

19.

Illumina HiSeq 3000 (Neofusicoccum parvum; Vitis vinifera)

Organism:
Vitis vinifera; Neofusicoccum parvum
1 Series
21 Samples
Download data
Platform
Accession:
GPL22266
ID:
100022266

20.

Illumina HiSeq 3000 (Neofusicoccum parvum)

Organism:
Neofusicoccum parvum
1 Series
9 Samples
Download data
Platform
Accession:
GPL22265
ID:
100022265

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