GEO DataSets

(Submitter supplied) Nitrogen is a crucial nutrient element for plant growth and productivity, with both excess and deficiency in nitrogen fertilizer application posing adverse effects on plants and the environment. The internal mechanisms by which the medicinal plant Epimedium pubescens (E. pubescens) adapts to varying nitrogen levels remain unclear. This study employed one-year-old E. pubescens as the experimental material to systematically analyze the changes in plant growth traits, carbon metabolites, and Icariin-Flavonoids content under different exogenous nitrogen levels. more...

Organism:

Epimedium pubescens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL34251

27 Samples

Download data: TXT

(Submitter supplied) In the early stages (30 days) of phosphorus deficiency stress, Epimedium pubescens leaves cope with short-term phosphorus deficiency by increasing the expression of related genes such as carbon metabolism, flavonoid synthesis and hormone signal transduction pathways, producing sufficient energy, scavenging ROS, and adjusting plant morphology. However, with the extension of stress duration to 90 days, the expression of genes related to phosphorus cycling and phosphorus recovery (PHT1-4, PHO1 homolog3, PAP) was upregulated, and transcriptional changes and post-transcriptional regulation (miRNA regulation and protein modification) were enhanced to resist long-term phosphorus deficiency stress. more...

Organism:

Epimedium pubescens

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL34251

12 Samples

Download data: XLS

(Submitter supplied) In the early stages (30 days) of phosphorus deficiency stress, Epimedium pubescens leaves cope with short-term phosphorus deficiency by increasing the expression of related genes such as carbon metabolism, flavonoid synthesis and hormone signal transduction pathways, producing sufficient energy, scavenging ROS, and adjusting plant morphology. However, with the extension of stress duration to 90 days, the expression of genes related to phosphorus cycling and phosphorus recovery (PHT1-4, PHO1 homolog3, PAP) was upregulated, and transcriptional changes and post-transcriptional regulation (miRNA regulation and protein modification) were enhanced to resist long-term phosphorus deficiency stress. more...

Organism:

Epimedium pubescens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL34251

12 Samples

Download data: XLS

(Submitter supplied) During the process of flower opening, most petals move downward in the direction of pedicel (i.e., epinastic movement). In most Delphinium flowers, however, their two lateral petals display a very peculiar movement, the mirrored helical rotation. Such a distinctive petal movement requires the twist of the stalk. However, in some lineages, their lateral petals also exhibit asymmetric bending that increases the degree of mirrored helical rotation, facilitating the formation of a 3D final shape. more...

Organism:

Delphinium anthriscifolium

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33999

89 Samples

Download data: FASTA, TXT

(Submitter supplied) Novel miRNAs of P.hexandrum

Organism:

Sinopodophyllum hexandrum

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL26934

2 Samples

Download data: TXT, XLS

(Submitter supplied) ngs2013_09_aap-ideev-petals in ranunculaceae-Identification of putative NdAP3-3 target genes-Developmental and genetic origin of shape diversity and evolutionary role.

Organism:

Nigella damascena

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29243

12 Samples

Download data: FASTA, TXT

(Submitter supplied) The current experiment was designed to obtain a broad characterization of the genetic pathways acting in early Aquilegia coerulea floral meristem development. We conducted an in-depth transcriptome profiling of early floral development in A. coerulea at four finely dissected developmental stages, with eight biological replicates per stage. . The developmental window we sequenced sampled stages that started with a late phase of stamen initiation, covered the period of FM termination, and ended with the initial stage of morphogenesis of the floral organs.

Organism:

Aquilegia coerulea

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29181

32 Samples

Download data: TSV

(Submitter supplied) Molecular mechanisms of flowering in Adonis amurensis

Organism:

Adonis amurensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26179

6 Samples

Download data: FA, XLS

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Papaver somniferum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26481

33 Samples

Download data

(Submitter supplied) Purpose: Opium poppy is one of the most important medical plants and remains the only commercial resource of morphinan-based painkillers. However, little is known about its regulation mechanism in benzylisoquinoline alkaloids (BIAs) biosynthesis. Herein, the Transcriptome dataset of Opium poppy was constructed to identify the gene involved in its regulation mechanism in BIAs biosynthesis. Methods: Using Illumina HiSeq X Ten platform, 33 samples of Illumina transcriptome data from different tissues, growth phases and cultivars were constructed. more...

Organism:

Papaver somniferum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26481

12 Samples

Download data: TXT

(Submitter supplied) Purpose: Opium poppy is one of the most important medical plants and remains the only commercial resource of morphinan-based painkillers. However, little is known about its regulation mechanism in benzylisoquinoline alkaloids (BIAs) biosynthesis. Herein, the Transcriptome dataset of Opium poppy was constructed to identify the gene involved in its regulation mechanism in BIAs biosynthesis. Methods: Using Illumina HiSeq X Ten platform, 33 samples of Illumina transcriptome data from different tissues, growth phases and cultivars were constructed. more...

Organism:

Papaver somniferum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26481

12 Samples

Download data: TXT

(Submitter supplied) Purpose: Opium poppy is one of the most important medical plants and remains the only commercial resource of morphinan-based painkillers. However, little is known about its regulation mechanism in benzylisoquinoline alkaloids (BIAs) biosynthesis. Herein, the Transcriptome dataset of Opium poppy was constructed to identify the gene involved in its regulation mechanism in BIAs biosynthesis. Methods: Using Illumina HiSeq X Ten platform, 33 samples of Illumina transcriptome data from different tissues, growth phases and cultivars were constructed. more...

Organism:

Papaver somniferum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26481

9 Samples

Download data: TXT

(Submitter supplied) To facilitate genome annotation, we performed RNA sequencing of seven different opium poppy tissues (leaf, petal, stamen, capsule, stem, fine root, tap root).

Organism:

Papaver somniferum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24662

9 Samples

Download data: GTF, TXT

(Submitter supplied) To understand the biosynthesis of C. majus BIAs, we performed de novo transcriptome sequencing of leaf and root tissues of C. majus using Illumina high-throughput sequencing technology.

Organism:

Chelidonium majus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25353

4 Samples

Download data: FA, MATRIX

(Submitter supplied) The molecular mechanism of seed morphophysiological dormancy of Epimedium pseudowushanense B.L.Guo. remains largely unknown. The endogenous ABA and GA content of E. pseudowushanense seeds at three developmental stages was quantitatively determined. The result showed the levels of ABA in E. pseudowushanense seeds decreased during the seed embryo growing and development, levels of GA3 increased during seed embryo growing, and levels of GA4 increased during seed dormancy releasing and seed sprouting. more...

Organism:

Epimedium pseudowushanense

Type:

Expression profiling by high throughput sequencing

Platform:

GPL21619

3 Samples

Download data: FA, TXT

(Submitter supplied) In this study, we have performed Illumina based RNA sequencing to characterize the transcriptome and expression profiles of genes expressed in 4 tissues of A. carmichaelii. RNA sequencing and de novo transcriptome assembly fo A. carmichaelii resulted in a total of 128,183 unigenes with 56,928 unigenes being annotated using NCBI-nr database. Transcriptome profile and analysis for 4 tissues of A. carmichaelii showed that unigenes annotated as possible rate-determining steps of aconitine-type biosynthetic pathway were highly expressed in the root.

Organism:

Aconitum carmichaelii

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24196

4 Samples

Download data: FASTA, TXT

(Submitter supplied) Transcriptomes for two types of leaves in R. tricophyllus

Organism:

Ranunculus trichophyllus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL21571

6 Samples

Download data: FASTA, TXT, XLSX

(Submitter supplied) MicroRNAs (miRNA) are ~21 nucleotide long, small endogenous non-coding RNAs that functioning in regulation of gene expression found in many eukaryotes. In this study, small RNA libraries of opium poppy from four different tissues (leaf, root, capsule, stem) were sequenced using high-throughput next generation Illumina sequencing (Solexa) technology to investigate potential mode of actions of miRNAs in alkaloid biosynthesis. more...

Organism:

synthetic construct; Papaver somniferum

Type:

Non-coding RNA profiling by array

Platform:

GPL14922

4 Samples

Download data: TXT, XLS

(Submitter supplied) To identify the molecular basis of genome-wide transcriptome analysis in induced opium poppy capsule tissues NimbleGen microarray (12X135 K element) analysis was performed. Fungal elicitor methyl jasmonate (MeJa) treatment was applied on capsules of opium poppy during 0, 3, and 12 h.

Organism:

Papaver somniferum

Type:

Expression profiling by array

Platform:

GPL18307

4 Samples

Download data: CALLS, PAIR

(Submitter supplied) Sampada and Sujata are two contrasting genotypes of Papaver somniferum that are contrasting in terms of their latex and alkaloid profiles. The major objective of the present study was to use a small-scale (750 target genes) microarray of P. somniferum for identification of genes that are differentially expressed in the capsule walls of the two contrasting genotypes, Sampada and Sujata. Nidarshana Chaturvedi and Mridula Singh made equal contribution as first authors to this data.

Organism:

Papaver somniferum

Type:

Expression profiling by array

Platform:

GPL14625

2 Samples

Download data: TXT