txid3487[Organism:exp] - GEO DataSets

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Select item 2001526721.

Gene expression analysis of mulberry (Morus atropurpurea) response to cadmium stress

(Submitter supplied) Mulberry (Morus atropurpurea) is an important economic woody tree with rapid growth rate and large biomass, which had great potential for heavy metals remediation. To further understand the mechanisms involved in cadmium accumulation and detoxification in mulberry, we carried out a transcriptomic study to get insights into the molecular mechanisms of the mulberry response to cadmium stress using RNA-seq analysis with BGISEQ-500.

Organism:: Morus alba var. atropurpurea

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28701
12 Samples

Download data: TXT

Series

Accession:: GSE152672

ID:: 200152672

SRA Run Selector

Select item 2001568222.

Transcriptome analysis of Indian mulberry leaf tissue

(Submitter supplied) The mian goal of the study was to identify drought responsive genes of Indian mulberry (Morus alba L.) leaf tissue. Drought stress was imposed at whole plant leve; usig gravimetric approach. Leaf tissue was harvested 14 days post drought stress imposition and used for transcriptome analaysis. Two levels of drought stress (100% and 40% soil field capacity) was maintained by controlled irrigation. The leaf tissue was collected, total RNA was isolated converted to cDNA and used for analysis

Organism:: Morus alba

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29065
4 Samples

Download data: TXT

Series

Accession:: GSE156822

ID:: 200156822

SRA Run Selector

Select item 2001113193.

Gene expression analysis of Ciboria carunculoides-infected Mulberry (Morus atropurpurea) fruit

(Submitter supplied) Ciboria carunculoides is a major fungal pathogen that infect of mulberry fruit causing popcorn disease leading extensive damage and productivity loss. In spite of such a major impact, mulberry fruit response to C. carunculoides infection is yet to be witnessed. We carried out a transcriptomic study to get insights into the molecular mechanisms and dynamics of the mulberry fruit response to the C. carunculoides infection using RNA-seq analysis with Illumina HiSeq 2000.

Organism:: Morus alba var. atropurpurea

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19047
6 Samples

Download data: XLS

Series

Accession:: GSE111319

ID:: 200111319

SRA Run Selector

Select item 2000600304.

Gene expression analysis of Mulberry root after inoculation with Ralstonia solanacearum.

(Submitter supplied) Bacterial wilt, caused by the soil-borne bacterium Ralstonia solanacearum, is a lethal disease of mulberry, but the molecular mechanisms of the host resistance responses to R. solanacearum remain unclear. In order to better understand molecular resistance mechanisms to R. solanacearum in mulberry, we set out to define the changes in gene expression of resistance and susceptible mulberry cultivars after inoculation with R. more...

Organism:: Morus alba var. atropurpurea

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19047
10 Samples

Download data: TXT

Series

Accession:: GSE60030

ID:: 200060030

SRA Run Selector

Select item 2000848895.

Identification and Comparative Analysis of Drought Responsive microRNA Targets in Mulberry (Morus alba L.) by Degradome Sequencing

(Submitter supplied) MicroRNAs (miRNAs) are endogenous non-coding small RNAs containing 21-24 nucleotides, and play an important function in the course of stand up to adversity. Identification of miRNA target mRNAs is essential for their functional analysis. In order to anatomize miRNA guided gene regulation under drought stress, we performed a transcriptome-wide experimental method using high throughput degradome sequencing to directly detect drought stress responsive miRNA targets in mulberry. more...

Organism:: Morus alba

Type:: Expression profiling by high throughput sequencing; Other

Platform:: GPL22242
2 Samples

Download data: TXT

Series

Accession:: GSE84889

ID:: 200084889

SRA Run Selector

Select item 2000704286.

Gene expression analysis of diploid and autotetraploids of Mulberry (Morus atropurpurea)

(Submitter supplied) Autotetraploid carries several phenotypic changes with larger leaves and fruit compared to diploid. To analysis of phenotypic changes in mulberry autotetraploids on the transcriptome, we performed RNA-Seq analyses on mulberry leaf samples of diploid and autotetraploids using Illumina HiSEq 2000.

Organism:: Morus alba var. atropurpurea

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19047
6 Samples

Download data: TXT

Series

Accession:: GSE70428

ID:: 200070428

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000557007.

Fig and fig wasp mutualism

(Submitter supplied) A striking property of the ancient and obligate mutualism between figs and their pollinating wasps is that fig wasps consistently oviposit in the inner flowers of the fig syconium (gall flowers, which develop into galls that house developing larvae), but typically do not use the outer ring of flowers (seed flowers, which develop into seeds). To better understand differences between gall and seed flowers that might influence oviposition choices, and the unknown mechanisms underlying gall formation, we used a metatranscriptomic approach to analyze eukaryotic gene expression within fig flowers at the time of oviposition choice and early gall development. more...