GEO DataSets

(Submitter supplied) We sequenced mRNA of G. biloba leaves from different planting densities using the Illumina HiSeq4000 platform. We identified the transcriptome changes in leaves , which provided valuable information for uncovering the molecular mechanisms of flavonoid accumulation in G. biloba under different densities.

Organism:

Ginkgo biloba

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24012

9 Samples

Download data: TXT

(Submitter supplied) We sequenced mRNA of G. biloba leaves from truncation treatment and control using the Illumina HiSeq4000 platform. We identified the transcriptome changes in leaves between truncation group and control group, which provided valuable information for uncovering the molecular mechanisms of flavonoid accumulation in G. biloba under rejuvenation.

Organism:

Ginkgo biloba

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24012

6 Samples

Download data: TXT

(Submitter supplied) High-throughput RNA, sRNA and degradome sequencing were conducted to identify a large number of mRNA, miRNAs and their targets in G. biloba ovules at two different developmental stage, which provided useful information for uncovering the secretion regulatory mechanisms of G. biloba pollination drop.

Organism:

Ginkgo biloba

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL24562 GPL24012

7 Samples

Download data: TXT

(Submitter supplied) We sequenced mRNA from the different development stage of G. biloba embryo using the Illumina HiSeq 4000 platform to generate the transcriptome dynamics to explore ginkgo embryo development mechanism of post-maturation and lay the foundation for revealing the molecular mechanisms of seed dormancy and germination of G. biloba seed.

Organism:

Ginkgo biloba

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL24012 GPL24562

15 Samples

Download data: TXT

(Submitter supplied) We conducted RNA-seq from the Ginkgo leaves after UV-B treatment,and constructed the molecular regulatory network of flavonoids synthesis under UV-B radiation in G. biloba.

Organism:

Ginkgo biloba

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24012

6 Samples

Download data: TXT

(Submitter supplied) We sequenced mRNA from Ginkgo biloba leaves grown at different developmental stages using the Illumina HiSeq4000 platform to generate the transcriptome dynamics that may serve as a gene expression profile blueprint for different response patterns during autumn leaf senescence and coloration. These results contribute to the elucidation of the molecular mechanisms involved in the leaf coloration and senescence in G. more...

Organism:

Ginkgo biloba

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24012

9 Samples

Download data: TXT

(Submitter supplied) We sequenced sRNA from the ovular secretions of G. biloba to identify the presence of miRNAs, which provide the first evidence of the extracellular miRNAs function in ovular secretions of gymnosperms .

Organism:

Ginkgo biloba

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL24012

1 Sample

Download data: TXT

(Submitter supplied) High-throughput RNA, sRNA and degradome sequencing were performed to identify a large number of miRNAs in G. biloba leaf to provide useful information for uncovering the regulatory networks of color formation in G. biloba leaves.

Organism:

Ginkgo biloba

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL24562

2 Samples

Download data: FA, TXT

(Submitter supplied) High-throughput RNA, sRNA and degradome sequencing were performed to identify a large number of mRNA, miRNAs and their targets in G. biloba cambium at different ages to provide useful information for uncovering the regulatory networks of ageing in long-lived old trees.

Organism:

Ginkgo biloba

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL19583

16 Samples

Download data: TXT

(Submitter supplied) To explore the overall long noncoding RNA (lncRNA) involved in major developmental stages of Ginkgo biloba leaves , we deeply sequenced samples of leaves from different developmental stages (from April to October) using strand-specific RNA sequencing (ssRNA-seq) menthod. We obtained 27.44 Gb raw data and identified 1323 novel lncRNAs. We also categorized the novel lncRNAs as intergenic, intronic, antisense and sense based on their location on theGinkgo biloba genome. more...

Organism:

Ginkgo biloba

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL24562

1 Sample

Download data: FA, TXT

(Submitter supplied) We sequenced mRNA from the leaves of mutant and normal green leaves of Ginkgo biloba using the Illumina HiSeq4000 platform to generate the transcriptome dynamics that may serve as a gene expression profile blueprint for leaf color variation of the mutant in Ginkgo biloba.

Organism:

Ginkgo biloba

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24012

4 Samples

Download data: TXT

(Submitter supplied) High-throughput small RNA sequencing were performed to identify a large number of miRNAs and their targets in mature G. biloba ovules. Our study is the first to provide useful information for uncovering the regulatory networks of miRNAs in basal gymnosperm G. biloba ovules.

Organism:

Ginkgo biloba

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL19583

1 Sample

Download data: FA

(Submitter supplied) Here we use bisulfite conversion of RNA combined with high-throughput IIlumina sequencing (RBS-seq) to identify single-nucleotide resolution of m5C sites in transfer RNAs of all three sub-cellular transcriptomes across six diverse species that include, the single-celled algae Nannochloropsis oculata, the macro algae Caulerpa taxifolia and multi-cellular higher plants Arabidopsis thaliana, Brassica rapa, Triticum durum and Ginkgo biloba.

Organism:

Brassica rapa; Caulerpa taxifolia; Ginkgo biloba; Arabidopsis thaliana; Triticum turgidum subsp. durum; Nannochloropsis oculata

Type:

Other; Non-coding RNA profiling by high throughput sequencing

6 related Platforms

14 Samples

Download data: XLS, XLSX

(Submitter supplied) Here we use bisulfite conversion of RNA combined with high-throughput IIlumina sequencing (RBS-seq) to identify single-nucleotide resolution of m5C sites in non-coding ribosomal RNAs of all three sub-cellular transcriptomes across six diverse species that included, the single-celled algae Nannochloropsis oculata, the macro algae Caulerpa taxifolia and multi-cellular higher plants Arabidopsis thaliana, Brassica rapa, Triticum durum and Ginkgo biloba. more...

Organism:

Ginkgo biloba; Triticum turgidum subsp. durum; Caulerpa taxifolia; Arabidopsis thaliana; Brassica rapa; Nannochloropsis oculata

Type:

Other; Non-coding RNA profiling by high throughput sequencing

6 related Platforms

13 Samples

Download data: XLSX

(Submitter supplied) High-throughput small RNA sequencing were performed to identify a large number of miRNAs and their targets in mature female and male G. biloba leaves for the first time. We ascertained that the regulatory networks of the miRNAs are involved in many different primary biological processes based on potential target designations. Our study is the first to provide useful information for uncovering the regulatory networks of miRNAs in basal gymnosperm G. more...

Organism:

Ginkgo biloba

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL19583

2 Samples

Download data: FA, TXT

(Submitter supplied) We sequenced mRNA from mature ovules and fully expanded leaves of female G. biloba to generate a comprehensive gene expression profile. These results provide valuable gene expression information, which will contribute to facilitate our understanding of various biological mechanisms between ovules and leaves and uncover a more important molecular insight toward ovule evolution in early seed plants.

Organism:

Ginkgo biloba

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19583

2 Samples

Download data: FA, TXT

(Submitter supplied) Small RNAs (21-24 nt) are pivotal regulators of gene expression that guide both transcriptional and post-transcriptional silencing mechanisms in diverse eukaryotes, including most if not all plants. MicroRNAs (miRNAs) and short interfering RNAs (siRNAs) are the two major types, both of which have a demonstrated and important role in plant development, stress responses and pathogen resistance. In this work, we used a deep sequencing approach (Sequencing-By-Synthesis, or SBS) to develop sequence resources of small RNAs from different Ginkgo biloba tissues (leaves, female and male cones). more...

Organism:

Ginkgo biloba

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL13461

3 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Citrus sinensis; Ginkgo biloba; Carica papaya; Capsicum annuum; Lactuca sativa; Zea mays; Amborella trichopoda; Gossypium arboreum; Populus trichocarpa; Nicotiana tabacum; Erythranthe guttata; Hordeum vulgare; Triticum aestivum; Zostera marina; Aristolochia fimbriata; Miscanthus x giganteus; Persea americana; Petunia x hybrida; Solanum tuberosum; Setaria italica; Musa acuminata; Marsilea quadrifolia; Vitis vinifera; Cycas rumphii; Nuphar advena; Chlamydomonas reinhardtii; Volvox carteri; Picea abies; Cucurbita maxima; Solanum lycopersicum; Sorghum bicolor; Silene latifolia; Panicum virgatum; Chara corallina

Type:

Non-coding RNA profiling by high throughput sequencing

34 related Platforms

99 Samples

Download data: TXT