GEO DataSets

(Submitter supplied) The data in the present study suggested the possibility of using UV and γ-radiation to enhance lipid accumulation along with detailed insights at the molecular level.The transcriptomic data at 24 h post UV (1 J/cm2) and γ-radiation (1 kGy) revealed foremost effect of UV on photosynthetic machinery while in γ-, DNA damage, repair and replication at a global level. In addition, the key fatty acid biosynthesis related genes were also found to be upregulated which coincided with 1.56- and 1.73-fold increase in lipid content

Organism:

Chlorella sorokiniana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30017

6 Samples

Download data: FASTA, TXT

(Submitter supplied) Purpose: The purpose of this study are to identify the miRNA involved in regulating the production of metabolites in Chlorella sorokiniana and Chlorella zofingiensis under normal and stress-induced condition through RNA-sequencing technique. Methods: miRNA transcriptome profile from normal and stress sample of C. sorokiniana and C. zofingiensis were generated, in triplicate, using Illumina Miseq. The sequence reads that passed quality filters were analysed using CLC genomic workbench and OmiRas. more...

Organism:

Chlorella sorokiniana; Chromochloris zofingiensis

Type:

Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL24309 GPL24310

12 Samples

Download data: XLSX

(Submitter supplied) Purpose: The purpose of this study are to identify the genes involved in regulating the production of metabolites in Chlorella sorokiniana under stress-induced condition through RNA-sequencing technique. Methods:Transcriptome profile from normal and stress sample of C. sorokiniana were generated, in triplicate, using Illumina Hiseq2000. The sequence reads that passed quality filters were de-novo assembled using Trinity doftware, followed by analysis using Burrows–Wheeler Aligner (BWA) and DESeq2. more...

Organism:

Chlorella sorokiniana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24160

6 Samples

Download data: FASTA, XLSX

(Submitter supplied) Micractinium conductrix SAG 241.80 secretes sugars (especially maltose) at pH 5.7 while very little sugar is found at pH 7.6. Another algae, Chlorella sorokiniana does not secrete sugars at either pH. We evaluated the transcriptional profiles of both species of algae at pH 5.7 and 7.6 to make comparisons in the regulation of potential genes involved in these pathways.

Organism:

Chlorella sorokiniana; Micractinium conductrix

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL23462 GPL23463

12 Samples

Download data: FASTA, TXT