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Select item 2001250851.

Method for absolute quantification of microbial communities by using both microarrays and competitive PCR

(Submitter supplied) We investigated an improved method that combines competitive PCR and microarray techniques. This approach allowed us to quantify specific bacterial groups mounted on DNA chips with accuracy close to that of real-time PCR, despite a measurement at the end point of PCR, and also to estimate the bacterial DNA content in sample DNA.

Organism:: Bacteria; Acinetobacter baumannii; Escherichia coli; Staphylococcus aureus; Staphylococcus epidermidis; Bacillus cereus; Schaalia odontolytica; Fusobacterium nucleatum subsp. nucleatum; Treponema denticola; Cereibacter sphaeroides; Streptococcus gordonii; Streptococcus agalactiae; Enterococcus faecalis; Bifidobacterium adolescentis; Homo sapiens; Prevotella intermedia; Prevotella nigrescens; Campylobacter rectus; Helicobacter pylori; Pseudomonas aeruginosa; Aggregatibacter actinomycetemcomitans; Phocaeicola vulgatus; Capnocytophaga gingivalis; Deinococcus radiodurans; Streptococcus mutans; Streptococcus intermedius; Cutibacterium acnes; Neisseria meningitidis; Porphyromonas gingivalis; Fusobacterium nucleatum; Clostridium beijerinckii; Lactobacillus gasseri; Tannerella forsythia

Type:: Other

Platform:: GPL25612
178 Samples

Download data: CSV

Series

Accession:: GSE125085

ID:: 200125085

PubMed Similar studies Analyze with GEO2R

Select item 1000256122.

DNAchip_Genopal_ORAL_ver.1

(Submitter supplied) https://www.m-chemical.co.jp/en/products/departments/mcc/rd/product/1201266_7562.html

Organism:: Bacteria; Treponema denticola; Campylobacter rectus; Aggregatibacter actinomycetemcomitans; Porphyromonas gingivalis; Capnocytophaga gingivalis; Streptococcus gordonii; Streptococcus mutans; Streptococcus intermedius; Tannerella forsythia; Prevotella intermedia; Fusobacterium nucleatum subsp. nucleatum

1 Series
178 Samples

Platform

Accession:: GPL25612

ID:: 100025612

Select item 1000242383.

HiSeq X Ten (Tannerella forsythia)

Organism:: Tannerella forsythia

Platform

Accession:: GPL24238

ID:: 100024238

Select item 3035624864.

Tannerella forsythia_0.001amol (16SrRNA gene)_n=2

Organism:: Tannerella forsythia

Source name:: Tannerella forsythia_0.001amol (16SrRNA gene)

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562486

ID:: 303562486

Select item 3035624855.

Tannerella forsythia_0.001amol (16SrRNA gene)_n=1

Organism:: Tannerella forsythia

Source name:: Tannerella forsythia_0.001amol (16SrRNA gene)

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562485

ID:: 303562485

Select item 3035624846.

Tannerella forsythia_0.01amol (16SrRNA gene)_n=2

Organism:: Tannerella forsythia

Source name:: Tannerella forsythia_0.01amol (16SrRNA gene)

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562484

ID:: 303562484

Select item 3035624837.

Tannerella forsythia_0.01amol (16SrRNA gene)_n=1

Organism:: Tannerella forsythia

Source name:: Tannerella forsythia_0.01amol (16SrRNA gene)

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562483

ID:: 303562483

Select item 3035624828.

Tannerella forsythia_0.1amol (16SrRNA gene)_n=2

Organism:: Tannerella forsythia

Source name:: Tannerella forsythia_0.1amol (16SrRNA gene)

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562482

ID:: 303562482

Select item 3035624819.

Tannerella forsythia_0.1amol (16SrRNA gene)_n=1

Organism:: Tannerella forsythia

Source name:: Tannerella forsythia_0.1amol (16SrRNA gene)

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562481

ID:: 303562481

Select item 30356248010.

Tannerella forsythia_1amol (16SrRNA gene)_n=2

Organism:: Tannerella forsythia

Source name:: Tannerella forsythia_1amol (16SrRNA gene)

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562480

ID:: 303562480

Select item 30356247911.

Tannerella forsythia_1amol (16SrRNA gene)_n=1

Organism:: Tannerella forsythia

Source name:: Tannerella forsythia_1amol (16SrRNA gene)

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562479

ID:: 303562479

Select item 30356242112.

8 kinds of bacterial genomic DNA mixture_dilution_step5_n=3

Organism:: Aggregatibacter actinomycetemcomitans; Porphyromonas gingivalis; Tannerella forsythia; Fusobacterium nucleatum; Streptococcus mutans; Treponema denticola; Streptococcus gordonii; Prevotella intermedia

Source name:: 8 kinds of bacterial genomic DNA mixture_dilution_step5

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562421

ID:: 303562421

Select item 30356242013.

8 kinds of bacterial genomic DNA mixture_dilution_step5_n=2

Organism:: Porphyromonas gingivalis; Tannerella forsythia; Aggregatibacter actinomycetemcomitans; Fusobacterium nucleatum; Streptococcus mutans; Treponema denticola; Streptococcus gordonii; Prevotella intermedia

Source name:: 8 kinds of bacterial genomic DNA mixture_dilution_step5

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562420

ID:: 303562420

Select item 30356241914.

8 kinds of bacterial genomic DNA mixture_dilution_step5_n=1

Organism:: Treponema denticola; Aggregatibacter actinomycetemcomitans; Streptococcus gordonii; Porphyromonas gingivalis; Fusobacterium nucleatum; Streptococcus mutans; Tannerella forsythia; Prevotella intermedia

Source name:: 8 kinds of bacterial genomic DNA mixture_dilution_step5

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562419

ID:: 303562419

Select item 30356241815.

8 kinds of bacterial genomic DNA mixture_dilution_step4_n=3

Organism:: Prevotella intermedia; Treponema denticola; Aggregatibacter actinomycetemcomitans; Streptococcus gordonii; Porphyromonas gingivalis; Fusobacterium nucleatum; Streptococcus mutans; Tannerella forsythia

Source name:: 8 kinds of bacterial genomic DNA mixture_dilution_step4

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562418

ID:: 303562418

Select item 30356241716.

8 kinds of bacterial genomic DNA mixture_dilution_step4_n=2

Organism:: Treponema denticola; Fusobacterium nucleatum; Streptococcus gordonii; Prevotella intermedia; Porphyromonas gingivalis; Streptococcus mutans; Aggregatibacter actinomycetemcomitans; Tannerella forsythia

Source name:: 8 kinds of bacterial genomic DNA mixture_dilution_step4

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562417

ID:: 303562417

Select item 30356241617.

8 kinds of bacterial genomic DNA mixture_dilution_step4_n=1

Organism:: Streptococcus mutans; Prevotella intermedia; Treponema denticola; Fusobacterium nucleatum; Streptococcus gordonii; Porphyromonas gingivalis; Aggregatibacter actinomycetemcomitans; Tannerella forsythia

Source name:: 8 kinds of bacterial genomic DNA mixture_dilution_step4

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562416

ID:: 303562416

Select item 30356241518.

8 kinds of bacterial genomic DNA mixture_dilution_step3_n=3

Organism:: Porphyromonas gingivalis; Fusobacterium nucleatum; Streptococcus gordonii; Tannerella forsythia; Streptococcus mutans; Prevotella intermedia; Treponema denticola; Aggregatibacter actinomycetemcomitans

Source name:: 8 kinds of bacterial genomic DNA mixture_dilution_step3

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562415

ID:: 303562415

Select item 30356241419.

8 kinds of bacterial genomic DNA mixture_dilution_step3_n=2

Organism:: Streptococcus mutans; Porphyromonas gingivalis; Fusobacterium nucleatum; Tannerella forsythia; Treponema denticola; Streptococcus gordonii; Prevotella intermedia; Aggregatibacter actinomycetemcomitans

Source name:: 8 kinds of bacterial genomic DNA mixture_dilution_step3

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562414

ID:: 303562414

Select item 30356241320.

8 kinds of bacterial genomic DNA mixture_dilution_step3_n=1

Organism:: Porphyromonas gingivalis; Fusobacterium nucleatum; Tannerella forsythia; Aggregatibacter actinomycetemcomitans; Streptococcus mutans; Treponema denticola; Streptococcus gordonii; Prevotella intermedia

Source name:: 8 kinds of bacterial genomic DNA mixture_dilution_step3

Platform:: GPL25612
Series:: GSE125085

Download data: CSV

Sample

Accession:: GSM3562413

ID:: 303562413

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txid28112[Organism:noexp] (29)
GEO DataSets
txid28112[Organism:exp] (1)
Conserved Domains
threonyl-tRNA synthetase [Roseiflexus sp. RS-1]
threonyl-tRNA synthetase [Roseiflexus sp. RS-1]
gi|148654295|gnl|REF_jgi|RoseRS_011 |YP_001274500.1|

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