GEO DataSets

(Submitter supplied) In dinoflagellates, the most unique and divergent nuclear organization among the known diversity of eukaryotes has evolved. The list of highly unusual features of dinoflagellate nuclei and genomes is long -- permanently condensed liquid crystalline chromosomes, in which histones are not the main packaging component, genes organized as very long unidirectional gene arrays, general absence of transcriptional regulation, high abundance of the otherwise very rare DNA modification 5-hydroxymethyluracil (5-hmU), and many others. more...

Organism:

Homo sapiens; Bigelowiella natans; Breviolum minutum; Candida albicans; Saccharomyces cerevisiae

Type:

Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other

4 related Platforms

34 Samples

Download data: BEDGRAPH, BIGWIG

(Submitter supplied) Dinoflagellate chromosomes represent a unique evolutionary experiment, as they exist in a permanently condensed, liquid crystalline state, are not packaged by histones, and contain genes organized into polycistronic arrays, with minimal transcriptional regulation. We analyze the 3D genome of {Breviolum minutum}, and find large topological domains without chromatin loops, demarcated by convergent gene array boundaries (``dinoTADs’’). more...

Organism:

Breviolum minutum

Type:

Other

Platform:

GPL28838

35 Samples

Download data: HIC