GEO DataSets

(Submitter supplied) Transcriptional profiling of Aspergillus nidulans comparing control (growing on glucose) and carbon starving cultures.

Organism:

Aspergillus nidulans; Aspergillus nidulans FGSC A4

Type:

Expression profiling by array

Platform:

GPL16338

1 Sample

Download data: TXT

(Submitter supplied) Soil dwelling Aspergillus fungi possess the versatile metabolic capability to utilize complex organic compounds which are toxic to humans, yet the mechanisms they employ remain largely unknown. Benzo(a)pyrene is a common carcinogenic contaminant, posing a significant concern for human health. Here, we report that Aspergillus fungi can degrade benzo(a)pyrene effectively. In Aspergillus nidulans, exposure to benzo(a)pyrene results in transcriptomic and metabolic changes associated with cellular growth and energy generation, implying that the fungus utilizes benzo(a)pyrene as a food. more...

Organism:

Aspergillus nidulans FGSC A4

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25307

21 Samples

Download data: CSV

(Submitter supplied) The study aims essentially in the analysis of the transcriptomic and metabolomic profiles induced by the presence of the tested ionic liquids in the metabolism of Aspergillus nidulans. Focusing specially on the secondary metabolism, which genes are clustered.

Organism:

Aspergillus nidulans FGSC A4; Aspergillus nidulans; Neurospora crassa OR74A

Type:

Expression profiling by array

Platform:

GPL18227

9 Samples

Download data: CEL

(Submitter supplied) Transcriptome of A. nidulans R21 and ∆gprH strains when grown on MM+1% glucose for 24 hours and transferred to MM with no carbon for 4 and 8 hours

Organism:

Aspergillus nidulans; Aspergillus nidulans FGSC A4

Type:

Expression profiling by array

Platform:

GPL15870

12 Samples

Download data: TXT

(Submitter supplied) Transcriptome of A. nidulans ∆pkaA strain when grown on complete media (CM) and transferred to minimal media plus avicel as a sole carbon source for 8 and 24 hours

Organism:

Aspergillus nidulans FGSC A4; Aspergillus nidulans

Type:

Expression profiling by array

Platform:

GPL15870

6 Samples

Download data: TXT

(Submitter supplied) Transcriptome of A. nidulans TNO2A3, ∆msbA and ∆MHD strains when grown on complete media (YUU) and transferred to minimal media plus avicel as a sole carbon source for 24 hours

Organism:

Aspergillus nidulans; Aspergillus nidulans FGSC A4

Type:

Expression profiling by array

Platform:

GPL15870

12 Samples

Download data: TXT

(Submitter supplied) Transcriptome of A. nidulans TNO2a3 and ∆ptpB strains when grown on minimal media plus casaminoacids and transferred to minimal media plus glucose as a sole carbon source for 4 hours

Organism:

Aspergillus nidulans; Aspergillus nidulans FGSC A4

Type:

Expression profiling by array

Platform:

GPL15870

6 Samples

Download data: TXT

(Submitter supplied) The study aims essentially at the characterisation of suberin degradation mechanisms by Aspergillus nidulans, at a fundamental level. Suberin is an important protective barrier in plant, thus the study of its biodegradation significantly impacts on phytopatology. In addition, fungal suberin degrading enzymes might provide important insights to develop new waste management, bioremediation and biodeterioration prevention strategies.

Organism:

Aspergillus nidulans; Neurospora crassa OR74A; Aspergillus nidulans FGSC A4

Type:

Expression profiling by array

Platform:

GPL18227

12 Samples

Download data: CEL

(Submitter supplied) Purpose: To explore conservation of gene regulation by the transcription factor clr-2/clrB in Neurospora crassa and Aspergillus nidulans Methods: mRNA from wild type and clr-2/clrB mutants were collected after a culture shift from sucrose/glucose to Avicel (crystaline cellulose) or no carbon media Results: We show that N. crassa and A. nidulans have similair global transcriptional responses to Avicel, with several hundred genes showing specific induction, though the induced genes are more specifically targeted at cellulose for N. more...

Organism:

Aspergillus nidulans FGSC A4; Neurospora crassa OR74A

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL15146 GPL16600 GPL15147

22 Samples

Download data: FPKM_TRACKING, TXT

(Submitter supplied) Transcriptional profiling of A. nidulans comparing Xylose and Fructose grown on Wild type strain. The main objective was to identifiy genes related to Xylose transport. The experiment was further validated by real-time PCR.

Organism:

Aspergillus nidulans FGSC A4

Type:

Expression profiling by array

Platform:

GPL15870

6 Samples

Download data: TXT

(Submitter supplied) Transcriptome of A. nidulans TNO2a3, ∆snfA and ∆schA strains when grown on complete media (CM) and transferred to minimal media plus avicel as a sole carbon source for 8 and 24 hours.

Organism:

Aspergillus nidulans; Aspergillus nidulans FGSC A4

Type:

Expression profiling by array

Platform:

GPL15870

16 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of A. nidulans comparing the mutant strain alcApkcA ΔcnaA and ΔcnaA grown on alcA inducing conditions. The main objective was to identifiy genes related to ΔcnaA phenotype supression by pkcA overexpression. The experiment was further validated by real-time PCR.

Organism:

Aspergillus nidulans FGSC A4; Aspergillus nidulans

Type:

Expression profiling by array

Platform:

GPL15870

12 Samples

Download data: TXT

(Submitter supplied) In this study, we design and apply a DNA expression array for Aspergillus nidulans in combination with legacy data to form a comprehensive gene expression compendium. We apply a guilt-by-association-based analysis to predict the extent of the biosynthetic clusters for the 58 synthases active in our set of experimental conditions. A comparison with legacy data shows the method to be accurate in 13 out of 16 known clusters and nearly accurate for the remaining three. more...

Organism:

Aspergillus nidulans FGSC A4; Aspergillus nidulans

Type:

Expression profiling by array

Platform:

GPL15913

8 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of A. nidulans comparing starvation for 0 (reference), 12 and 24 h. The main objective was to identify genes specifically regulated during starvation by atmA and xprG. The results of the experiment were further validated by real-time PCR.

Organism:

Aspergillus nidulans FGSC A4; Aspergillus nidulans

Type:

Expression profiling by array

Platform:

GPL15870

18 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of A. nidulans comparing the mutant strain alcAypkA grown on inducing or repressing conditions. The main objective was to identifiy genes related to ypkA gene function. The experiment was further validated by real-time PCR and enzymatic assay.

Organism:

Aspergillus nidulans; Aspergillus nidulans FGSC A4

Type:

Expression profiling by array

Platform:

GPL15870

8 Samples

Download data: TXT

(Submitter supplied) Investigation of whole genome gene expression level changes in Aspergillus nidulans AN1599 (PbcR) overexpression mutant, compared to the FGSC A4 wild-type strain. Overexpression of the Zn(II)2Cys6 –type transcription factor, AN1599.4 (PbcR, pimaradiene biosynthetic cluster regulator), activates a secondary metabolite gene cluster in Aspergillus nidulans. Activation of the pathway in Aspergillus nidulans lead to a production of ent-pimara-8(14),15-diene.

Organism:

Aspergillus nidulans; Aspergillus nidulans FGSC A4

Type:

Expression profiling by array

Platform:

GPL14731

12 Samples

Download data: CALLS, PAIR, TXT

(Submitter supplied) Investigation of whole genome gene expression level changes in Aspergillus nidulans OE::rsmA compared to wild-type RDIT9.32 (veA).

Organism:

Aspergillus nidulans; Aspergillus nidulans FGSC A4

Type:

Expression profiling by genome tiling array

Platform:

GPL14973

12 Samples

Download data: FTR, NCD, TXT

(Submitter supplied) Agilent 60-mer oligonucleotide high-density arrays 4644 K with 42 034 available features. Oligonucleotides were designed with the eArray software from Agilent.

Organism:

Aspergillus nidulans FGSC A4

1 Series

1 Sample

Download data

(Submitter supplied) The parameters chosen for the custom array design were as follows: 11-micron feature size, 49-5241 array format, eukaryotic antisense target type, perfect-match probes only, probe selection region: 600 bases from 3' end and per instruction file, and eight as the minimum acceptable probes per sequence.

Organism:

Aspergillus nidulans FGSC A4; Neurospora crassa OR74A

2 Series

21 Samples

Download data: CDF, TXT