txid2038[Organism:exp] - GEO DataSets - NCBI

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Select item 2000074531.

Comparative genomic analysis of T.whipplei strains reveals that diversity is mainly related to the WiSP proteins

(Submitter supplied) In this work we analyzed the genomic diversity of several Tropheryma whipplei strains by microarray based-comparative genomic hybridization. Fifteen clinical isolates originating from biopsy samples recovered from different countries were compared with the T. whipplei Twist strain. For each isolate, the genes were defined as either present or absent/divergent using the GACK analysis software. Genomic changes were then further characterized by PCR and sequencing. more...

Organism:: Tropheryma whipplei

Type:: Genome variation profiling by array

Platform:: GPL3210
48 Samples

Download data: TXT

Series

Accession:: GSE7453

ID:: 200007453

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000057172.

Molecular Basis of Tropheryma whipplei Doxycycline Susceptibility Examined by Transcriptional Profiling

(Submitter supplied) The suceptibility of T. whipplei to doxycycline was investigated at the transcriptional level using a whole-genome DNA microarray. The microarray data showed good agreement with real-time quantitative PCR (R = 0.969). Exposure of T. whipplei with the subinhibitory concentration of doxycycline allowed to observe antibiotic-specific primary expression profiles, while indirect effects were detected with a 10 times higher concencentration. more...

Organism:: Tropheryma whipplei

Type:: Expression profiling by array

Platform:: GPL3210
9 Samples

Download data: TXT

Series

Accession:: GSE5717

ID:: 200005717

PubMed Similar studies Analyze with GEO2R

Select item 2000036933.

Global Transcriptome Analysis of Tropheryma whipplei in Response to Temperature Stresses

(Submitter supplied) Microarray analysis of the global gene expression patterns of Tropheryma whipplei in response to thermal stresses showed unique transcription profiles. A few genes were regulated after 15 min exposure at 43°C, including the dnaK regulon composed of grpE, hspR, dnaK, clpB, cbpA as well as the TWT745 ORFan gene which might encode for another heat-shock protein. This operon is likely to be regulated by two HspR associated inverted repeats (HAIR motifs) found within its 5' region. more...

Organism:: Tropheryma whipplei

Type:: Expression profiling by array

Platform:: GPL3210
12 Samples

Series

Accession:: GSE3693

ID:: 200003693

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000032104.

UR_TWT_version 1.0

(Submitter supplied) T. whipplei whole-genome microarray construction. 1,608 PCR primers were designed in order to amplify by PCR 804 annoted ORFs representing about 99.5% of T. whipplei genome {Raoult, 2003 26 /id}. The 0.5% remaining genes can not be targeted because their sequences share repeated regions impairing the design of specific probes. The following criteria were used to identify optimal forward and reverse primers to generate PCR products specific to each of the selected ORFs: (i) primers were highly specific for T. more...

Organism:: Tropheryma whipplei

3 Series
69 Samples

Platform

Accession:: GPL3210

ID:: 100003210

Select item 3001804555.

Tropheryma whipplei CGH microarray_DigNeuro18 vs Twist_rep3

Organism:: Tropheryma whipplei

Source name:: Test (DigNeuro18) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180455

ID:: 300180455

Select item 3001804546.

Tropheryma whipplei CGH microarray_DigNeuro18 vs Twist_rep2

Organism:: Tropheryma whipplei

Source name:: Test (DigNeuro18) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180454

ID:: 300180454

Select item 3001804537.

Tropheryma whipplei CGH microarray_DigNeuro18 vs Twist_rep1

Organism:: Tropheryma whipplei

Source name:: Test (DigNeuro18) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180453

ID:: 300180453

Select item 3001804528.

Tropheryma whipplei CGH microarray_Slow1B vs Twist_rep3

Organism:: Tropheryma whipplei

Source name:: Test (Slow1B) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180452

ID:: 300180452

Select item 3001804519.

Tropheryma whipplei CGH microarray_Slow1B vs Twist_rep2

Organism:: Tropheryma whipplei

Source name:: Test (Slow1B) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180451

ID:: 300180451

Select item 30018045010.

Tropheryma whipplei CGH microarray_Slow1B vs Twist_rep1

Organism:: Tropheryma whipplei

Source name:: Test (Slow1B) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180450

ID:: 300180450

Select item 30018044411.

Tropheryma whipplei CGH microarray_DigMusc17 vs Twist_rep3

Organism:: Tropheryma whipplei

Source name:: Test (DigMusc17) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180444

ID:: 300180444

Select item 30018044212.

Tropheryma whipplei CGH microarray_DigMusc17 vs Twist_rep2

Organism:: Tropheryma whipplei

Source name:: Test (DigMusc17) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180442

ID:: 300180442

Select item 30018044013.

Tropheryma whipplei CGH microarray_DigMusc17 vs Twist_rep1

Organism:: Tropheryma whipplei

Source name:: Test (DigMusc17) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180440

ID:: 300180440

Select item 30018043714.

Tropheryma whipplei CGH microarray_Dig15 vs Twist_rep3

Organism:: Tropheryma whipplei

Source name:: Test (Dig15) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180437

ID:: 300180437

Select item 30018043515.

Tropheryma whipplei CGH microarray_Dig15 vs Twist_rep2

Organism:: Tropheryma whipplei

Source name:: Test (Dig15) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180435

ID:: 300180435

Select item 30018043116.

Tropheryma whipplei CGH microarray_Dig15 vs Twist_rep1

Organism:: Tropheryma whipplei

Source name:: Test (Dig15) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180431

ID:: 300180431

Select item 30018042917.

Tropheryma whipplei CGH microarray_DigNeuro14 vs Twist_rep3

Organism:: Tropheryma whipplei

Source name:: Test (DigNeuro14) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180429

ID:: 300180429

Select item 30018042718.

Tropheryma whipplei CGH microarray_DigNeuro14 vs Twist_rep2

Organism:: Tropheryma whipplei

Source name:: Test (DigNeuro14) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180427

ID:: 300180427

Select item 30018042519.

Tropheryma whipplei CGH microarray_DigNeuro14 vs Twist_rep1

Organism:: Tropheryma whipplei

Source name:: Test (DigNeuro14) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180425

ID:: 300180425

Select item 30018042420.

Tropheryma whipplei CGH microarray_Art1 vs Twist_rep3

Organism:: Tropheryma whipplei

Source name:: Test (Art1) (channel 1) Reference (Twist) (channel 2)

Platform:: GPL3210
Series:: GSE7453

Download data: TXT

Sample

Accession:: GSM180424

ID:: 300180424

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txid2038[Organism:exp] (73)
GEO DataSets
Homo sapiens methyltransferase 6, tRNA N3-cytidine (METTL6), transcript variant ...
Homo sapiens methyltransferase 6, tRNA N3-cytidine (METTL6), transcript variant 1, mRNA
gi|1813786527|ref|NM_152396.4|

Nucleotide
PREDICTED: Homo sapiens one cut homeobox 2 (ONECUT2), transcript variant X2, mRN...
PREDICTED: Homo sapiens one cut homeobox 2 (ONECUT2), transcript variant X2, mRNA
gi|2217318078|ref|XM_047437946.1|

Nucleotide
one cut domain family member 2 [Homo sapiens]
one cut domain family member 2 [Homo sapiens]
gi|119220564|ref|NP_004843.2|

Protein
RecName: Full=Angiopoietin-related protein 2; AltName: Full=Angiopoietin-like pr...
RecName: Full=Angiopoietin-related protein 2; AltName: Full=Angiopoietin-like protein 2; Flags: Precursor
gi|13626119|sp|Q9UKU9.1|ANGL2_HUMAN

Protein

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