txid195[Organism:noexp] - GEO DataSets

(Submitter supplied) Background: The food-borne pathogen Campylobacter is one of the most important zoonotic pathogens. Compared to other zoonotic bacteria, Campylobacter species are quite susceptible to environmental or technological stressors. This might be due to the lack of many stress response mechanisms described in other bacteria. Nevertheless, Campylobacter is able to survive in the environment and food products. more...

Organism:: Campylobacter coli

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19973
4 Samples

Download data: WIG

Series

Accession:: GSE67466

ID:: 200067466

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000178053.

Genome analysis of C. jejuni and C. coli isolated from different regions of the same chicken

(Submitter supplied) The gut of chicken is mostly colonised with Campylobacter jejuni and with 100 fold less C. coli. The competitive ability of C. coli OR12 over C. jejuni OR1 has been examined in experimental broiler chickens following the observation that C. coli replaced an established C. jejuni intestinal colonisation within commercial chicken flocks reared outdoors (El-Shibiny, A., Connerton, P.L., Connerton, I.F., 2005. more...

Organism:: Campylobacter coli; Campylobacter coli RM2228; Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819; Campylobacter jejuni RM1221; Campylobacter jejuni

Type:: Genome variation profiling by array

Platform:: GPL9022
6 Samples

Download data: TXT

Series

Accession:: GSE17805

ID:: 200017805

Analyze with GEO2R

Select item 2000177014.

Genome analysis of C. jejuni and C. coli isolated from different regions of the same pig

(Submitter supplied) C. coli is the predominant Campylobacter strain that is found in pigs while C. jejuni if present will be 10- 100 folds less. Natural transformation can occur if there is a coexistence of both the strains in the intestine of pigs. Genome analyses were performed on a C. jejuni strain U101 isolated from the upper intestine and two C. coli strains, C101 and L101 isolated from caecum and lower intestine.

Organism:: Campylobacter coli; Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819; Campylobacter jejuni; Campylobacter jejuni RM1221; Campylobacter coli RM2228

Type:: Genome variation profiling by array

Platform:: GPL9022
9 Samples

Download data: GPR, TXT

Series

Accession:: GSE17701

ID:: 200017701

Analyze with GEO2R

Select item 2000167875.

Expanded MLST genotyping and comparative genomic hybridization of Campylobacter coli isolates from multiple hosts

(Submitter supplied) Although the majority of previous work on campylobacteriosis has centered on the species Campylobacter jejuni, Campylobacter coli, the sister group to C. jejuni, is also a significant problem, but remains a much less studied organism. The purpose of this study was to develop and apply an expanded 16 locus MLST genotyping scheme to a large collection of C. coli isolates sampled from a wide range of host species, and to complete microarray comparative genomic hybridizations for these same strains, in order to: (1) determine whether host specific clones, genotypes, or clonal complexes are evident and (2) evaluate whether there are particular genes comprising the dispensable portion of the C. more...